View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_63 (Length: 239)
Name: NF3537_low_63
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_63 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 39903814 - 39904035
Alignment:
| Q |
18 |
atagtgatactaatgataagggaaatactttatacnnnnnnngatgtataaatatagggaaatactgtatagtgcggaacaaaccaacaaaatttgacga |
117 |
Q |
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| T |
39903814 |
atagtgatactaatgataagggaaatactttatactttttttgatgtataaatatagggaaatactgtatagtgcggaacaaaccaacgaaatttgacga |
39903913 |
T |
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| Q |
118 |
ataacactaaaacctacccatgattgccactacaagtcaaaatttactataatattaaataaaaaatctgtaacagcttgtttcttcttcccgtcatttt |
217 |
Q |
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| T |
39903914 |
ataacactaaaacctacccatgattgccactacaagtcaaaatttactataatattaaataaaaaatctgtaacagcttgtttcttcttcccgtcatttt |
39904013 |
T |
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| Q |
218 |
tcgttgtttttaacccgtacca |
239 |
Q |
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| T |
39904014 |
tcgttgtttttaacccgtacca |
39904035 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 1497671 - 1497619
Alignment:
| Q |
130 |
cctacccatgattgccactacaagtcaaaatttactataatattaaataaaaaat |
184 |
Q |
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| T |
1497671 |
cctacccatgattgccactagaagccaaaa-ttact-taatattaaataaaaaat |
1497619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 28316297 - 28316243
Alignment:
| Q |
98 |
aaaccaacaaaatttgacgaataacactaaaacctacccatgattgccactacaa |
152 |
Q |
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| T |
28316297 |
aaaccaacaaaaattgacgaataacaccacatactacccatgatttccactacaa |
28316243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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