View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_65 (Length: 238)
Name: NF3537_low_65
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31074371 - 31074594
Alignment:
| Q |
1 |
taacctgaaatagcataacagctagaactaacaactataacaagaaagcaaccaagacccctaatatatatttggagtagtcatatttgtaatcttaaaa |
100 |
Q |
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| T |
31074371 |
taacctgaaatagcataacagctagaactaacaactataacaagaaagcaaccaagacccctaatatatatttggagtagtcatatttgtaatcataaaa |
31074470 |
T |
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| Q |
101 |
tgaaaagccacattagtcaaaccatctaagaaatcaaatctttaatcaacttcatattatagattgt---aagaactcaaggaaaatggaaaagaagcaa |
197 |
Q |
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| T |
31074471 |
tgaaaagccacattagtcaaaccatctaagaaatcaaatctttgatcagcttcatattatagattgtacgaataactcaaagaaaatggaaaagaagcaa |
31074570 |
T |
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| Q |
198 |
aactaatactactaacattgcaac |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
31074571 |
aactaatactactaacattgcaac |
31074594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 31063798 - 31063869
Alignment:
| Q |
96 |
taaaatgaaaagccacattagtcaaaccatctaagaaatcaaatcttt-aatcaacttcatattatagattg |
166 |
Q |
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|||||||||||||| |||||||| ||| ||||||||||| ||| |||| || ||||||| ||||||||||| |
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| T |
31063798 |
taaaatgaaaagccccattagtcgaacgatctaagaaattaaacctttgaacaaacttcaaattatagattg |
31063869 |
T |
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