View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_68 (Length: 230)
Name: NF3537_low_68
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_68 |
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| [»] chr2 (4 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 26977396 - 26977184
Alignment:
| Q |
31 |
aattaaatctaattgtgattttccaattagagtaaaaatatatgaagaaaaactatattagtt------------gtctttaatgaaaacaaa----atc |
114 |
Q |
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| T |
26977396 |
aattaaatctcattgtgattttccaatttgagtaaaaatatatgaagaaaa-ctatactaatttcccttgtgtatgtctttaatgaaaacaaattaaatc |
26977298 |
T |
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| Q |
115 |
aaaattt--accttgagaggtgccaaagtattgatcatatgatcgttaaatatcaatcaaacaaagttgaaagggatcggtgaaaaggaatatattatat |
212 |
Q |
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| T |
26977297 |
aaaatttttaccttgataggtaccaaagtattgatcatatgatcgttaaatatcaa----acaaagttgaaagggatcggtgaaaaggaatatattatat |
26977202 |
T |
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| Q |
213 |
aaagaaagtgaaacttgg |
230 |
Q |
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| T |
26977201 |
aaagaaagtgaaacttgg |
26977184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 27019046 - 27018937
Alignment:
| Q |
117 |
aatttaccttgagaggtgccaaagtattgatcatatgatcgttaaatatcaatcaaacaaagttgaaagggatcggtgaaaaggaatatattatataaag |
216 |
Q |
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| T |
27019046 |
aatttaccttgagaggtaccaaagtattgatcatatgatcgttaaatatcaa----acaaagttgaaagggatcggtgaaaaggaatatattatataaag |
27018951 |
T |
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| Q |
217 |
aaagtgaaacttgg |
230 |
Q |
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| T |
27018950 |
aaagtgaaacttgg |
27018937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 27089251 - 27089451
Alignment:
| Q |
51 |
ttccaattagagtaaaaatatatgaagaaaaactatattagttgtc------------tttaatgaaaacaaaatcaaaatttaccttgagaggtgccaa |
138 |
Q |
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| T |
27089251 |
ttccaattagagtaaaaatatatgaagaaaa-ctatattagttgtccttatgtatctctttaatgaaa-caaaatcaaaatttaccttgataggtaccaa |
27089348 |
T |
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| Q |
139 |
agta---ttgatcatatgatcgttaaatatcaatcaaacaa--------agttgaaagggatcggtgaaaaggaatatattatataaagaaagtgaaact |
227 |
Q |
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| T |
27089349 |
agtactattgatcatatgatcgttaaatatcaaacaaaggtttgggatgagttgaaatggaacggtgcaatagaatatattatataaagaaagcgaaact |
27089448 |
T |
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| Q |
228 |
tgg |
230 |
Q |
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||| |
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| T |
27089449 |
tgg |
27089451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 27019083 - 27019045
Alignment:
| Q |
27 |
gcctaattaaatctaattgtgattttccaattagagtaa |
65 |
Q |
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| T |
27019083 |
gcctaattaaatctcattgtgattttccaattagagtaa |
27019045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 34679793 - 34679581
Alignment:
| Q |
31 |
aattaaatctaattgtgattttccaattagagtaaaaatatatgaagaaaaactatattagttg------------tctttaatgaaaacaaa----atc |
114 |
Q |
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| T |
34679793 |
aattaaatctcattgtgattttccaattcgagtaaaaatatatgaagaaaa-ctatactaattgcccttgtgtatgtctttaatgaaaacaaattaaatc |
34679695 |
T |
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| Q |
115 |
aaaattt--accttgagaggtgccaaagtattgatcatatgatcgttaaatatcaatcaaacaaagttgaaagggatcggtgaaaaggaatatattatat |
212 |
Q |
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| T |
34679694 |
aaaatttttaccttgataggtaccaaagtattgatcatatgatcgttaaatatcaa----acaaagttgaaagggatcgatgaaaaagaatacattatat |
34679599 |
T |
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| Q |
213 |
aaagaaagtgaaacttgg |
230 |
Q |
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|||||||| ||||||||| |
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| T |
34679598 |
aaagaaagagaaacttgg |
34679581 |
T |
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