View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_8 (Length: 579)
Name: NF3537_low_8
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 175 - 561
Target Start/End: Original strand, 16675168 - 16675557
Alignment:
| Q |
175 |
ctaacctaatacctgattgaaactttcattttagttcccttaaacnnnnnnnn--cttttgataattgattcaacttaagattgaccatatgatgtttaa |
272 |
Q |
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| T |
16675168 |
ctaacctaatacctgattgaaactttcattttagttccctttaacttctttttttcttttgataattgattcaacctaagattgaccatatgatgtttag |
16675267 |
T |
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| Q |
273 |
ggcatgcatatggctatggcttgactactaaactttgtaaaaagctttcatttggtatctgatagaaactacaaatttacaactatggattaatagtgac |
372 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16675268 |
ggcatgcatatggctatggcctgactactaaactttgtaaaaagctttcatttggtatctgacagaaactacaaatttacaactatggattaatagtgac |
16675367 |
T |
|
| Q |
373 |
aataatttctcaacgactttttaaagtaaaatgtcgcatttaaattcacaacaattgattaattctcccattttattgctcttgaa-tcaattaagtcct |
471 |
Q |
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| T |
16675368 |
aataatttctcaacgactttttaaagtaaaatgtcgcatttaaattcacaacaattgattaattctcccattttattgctcttgaattcaattaaggcct |
16675467 |
T |
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| Q |
472 |
tcttaatgtttgcttttgtatttgaatttgaatgaagcaaacatgtgtttcttctcaaaagaactacaaacattcttccaggttgggtgt |
561 |
Q |
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| T |
16675468 |
tcttaatgtttgcttttgtatttgaatttgaatgaagcaaacttgtgtttcttctcaaaagaactacaaacattcttctaggttgggtgt |
16675557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 174 - 557
Target Start/End: Complemental strand, 17743309 - 17742921
Alignment:
| Q |
174 |
tctaacctaatacctgattgaaactttcattttagttccctt-aaacnnnnnnnn---cttttgataattgattcaacttaagattgaccatatgatgtt |
269 |
Q |
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| T |
17743309 |
tctaacctaataactgattgaaactttcattttagttccctttaaactttttttttttcttttgatgattgattcaacttaagattgaccatatgatgtt |
17743210 |
T |
|
| Q |
270 |
taaggcatgcatatggctatggcttgactactaaactttgtaaaaagctttcatttggtatctgatagaaactacaaatttacaactatggattaatagt |
369 |
Q |
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|| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17743209 |
tagggcatgcatatggctatggcctgactactaaactttttaaaaagcttccatttggtatctgatagaaactacaaatgtacaactatggattaatagt |
17743110 |
T |
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| Q |
370 |
gacaataatttctcaacgactttttaaagtaaaatgtcgcatttaaattcacaacaattgattaattctcccattttattgctcttgaa-tcaattaagt |
468 |
Q |
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| T |
17743109 |
gacaacaatttctcaacgaatttttaaagtaaaatgtcgcatttaaattcataacaattgattaattctccttttttattgctcttgaattcaactaagg |
17743010 |
T |
|
| Q |
469 |
ccttcttaatgtttgcttttgtatttgaatttgaatgaagcaaacatgtgtttcttctcaaaagaactacaaacattcttccaggttgg |
557 |
Q |
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| T |
17743009 |
ccttcttaatgtttgcttttgtatttgaatttaaatgaagcaaacatatgtttcttctcaaaagaactacaaacattctttgaggttgg |
17742921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 77 - 315
Target Start/End: Original strand, 20148994 - 20149234
Alignment:
| Q |
77 |
tatgacttttacgaggtttgtggcctttaacttgcatagacatatactacgtagatatcttattgggcagtgcaaaactattttaagtgttactttttct |
176 |
Q |
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|||| |||||||||| |||||||||| ||||||| ||| || ||||| |||||||||||||| | | || ||||||||||||| ||||||||| ||| |
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| T |
20148994 |
tatgtcttttacgagagttgtggccttcaacttgcttaggtatgtactatgtagatatcttattagctactgtaaaactattttaaatgttactttctct |
20149093 |
T |
|
| Q |
177 |
aacctaatacctgattgaaactttcattttagttcccttaaacnnnnnnnncttttgataattgattcaact--taagattgaccatatgatgtttaagg |
274 |
Q |
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|||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
20149094 |
aacctaatacctgattgaaactttcattttcgttccatttaacttttttttcatttgataattgattcaactgataagattgaccatatgatgtttaggg |
20149193 |
T |
|
| Q |
275 |
catgcatatggctatggcttgactactaaactttgtaaaaa |
315 |
Q |
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| ||||||| ||||| | |||||| |||||||| |||||| |
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| T |
20149194 |
taagcatatgcctatgacctgactaataaactttttaaaaa |
20149234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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