View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3537_low_9 (Length: 564)
Name: NF3537_low_9
Description: NF3537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3537_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 30346025 - 30346570
Alignment:
| Q |
1 |
gagaacaagaaagaaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatg |
100 |
Q |
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| T |
30346025 |
gagaacaagaaagaaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatg |
30346124 |
T |
|
| Q |
101 |
gaatagcacttgagagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagcttgcagggaat |
200 |
Q |
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| T |
30346125 |
gaatagcacttgagagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagcttgcagggaat |
30346224 |
T |
|
| Q |
201 |
tgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatcaa |
300 |
Q |
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| T |
30346225 |
tgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatcaa |
30346324 |
T |
|
| Q |
301 |
attcctacaagaagagtgcatgtgattgttaatggggttgatgaggatgagtttggagaagatgctgaattgggaaggaaatttagaaccaaaattggga |
400 |
Q |
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| T |
30346325 |
attcctacaagaagagtgcatgtgattgttaatggggttgatgaggatgagtttggagaagatgctgaattgggaaggaaatttagaaccaaaattggga |
30346424 |
T |
|
| Q |
401 |
ttccaagcaatgcaagtttagtacttggtgtagcagggagattagttaaagacaaaggtcatcctttgcttcatgaagcgtattcaaagctaataacaaa |
500 |
Q |
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| T |
30346425 |
ttccaagcaatgcaagtttagtacttggtgtagcagggagattagttaaagacaaaggtcatcctttgcttcatgaagcgtattcaaagctaataacaaa |
30346524 |
T |
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| Q |
501 |
acaccctaatgtttatttgattattgctggttctggaccatggggg |
546 |
Q |
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| T |
30346525 |
acaccctaatgtttatttgattattgctggttctggaccatggggg |
30346570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 200 - 544
Target Start/End: Complemental strand, 10841418 - 10841074
Alignment:
| Q |
200 |
ttgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatca |
299 |
Q |
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| T |
10841418 |
ttgttcctaaggttctaaatgagataagattcttcaacaaatattctcatcatgttgctattagtgatagttgtggtgagatgttaagagatgtttacca |
10841319 |
T |
|
| Q |
300 |
aattcctacaagaagagtgcatgtgattgttaatggggttgatgaggatgagtttggagaagatgctgaattgggaaggaaatttagaaccaaaattggg |
399 |
Q |
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| T |
10841318 |
aattccaagtagaagagttcatgtgattctcaatggtgttgacgaggaagattttagagaagatgctgaattaggaaaagagtttagaaccaaaattggg |
10841219 |
T |
|
| Q |
400 |
attccaagcaatgcaagtttagtacttggtgtagcagggagattagttaaagacaaaggtcatcctttgcttcatgaagcgtattcaaagctaataacaa |
499 |
Q |
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| T |
10841218 |
attccaagtaatgctagtttagtatttggagtagctggaagattagtaaaggataaaggtcatccattacttcatgaagcattttcaaggcttataacaa |
10841119 |
T |
|
| Q |
500 |
aacaccctaatgtttatttgattattgctggttctggaccatggg |
544 |
Q |
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| || | ||||| ||||||||| | ||||||||||||||||||| |
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| T |
10841118 |
agtacaccaatgtgtatttgattgtagctggttctggaccatggg |
10841074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 10841604 - 10841481
Alignment:
| Q |
14 |
aaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatggaatagcacttga |
113 |
Q |
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|||| ||||||||| |||||||||||||||| ||||||||||||| | || | ||||| |||||||||| || || |||||||| |||||| | || |
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| T |
10841604 |
aaccttttgatgttgttcattcagaaagtgtagcacttcctcattggcttgcaaaagatcttccaaatcttgttgtatcctggcatggcatagcattgga |
10841505 |
T |
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| Q |
114 |
gagtttgcaatcaagtatttttca |
137 |
Q |
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| T |
10841504 |
aagcttgcaatcgagcatttttca |
10841481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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