View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3538_high_11 (Length: 445)

Name: NF3538_high_11
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3538_high_11
NF3538_high_11
[»] chr3 (9 HSPs)
chr3 (11-428)||(23037165-23037582)
chr3 (19-422)||(23146925-23147328)
chr3 (19-429)||(23040050-23040460)
chr3 (19-423)||(23018259-23018663)
chr3 (34-342)||(23033871-23034179)
chr3 (40-419)||(23025297-23025676)
chr3 (30-423)||(23141284-23141677)
chr3 (40-423)||(23149904-23150287)
chr3 (307-359)||(22987478-22987530)
[»] chr6 (2 HSPs)
chr6 (19-425)||(21780940-21781346)
chr6 (307-357)||(14307656-14307706)
[»] scaffold0554 (1 HSPs)
scaffold0554 (18-423)||(5109-5514)
[»] chr8 (1 HSPs)
chr8 (307-357)||(23611543-23611593)
[»] chr1 (1 HSPs)
chr1 (303-359)||(12611308-12611364)


Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 23037165 - 23037582
Alignment:
Q  11 cagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23037165 cagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttaacccttttcag 23037264  T
Q  111 gcttaaaagctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgtt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23037265 gcttaaaagctccaacgtgcagatttttcgtatctgtctccaataattaccgtacggagcaaaagctatacttgtggaattgtaagagattatttctgtt 23037364  T
Q  211 actagtatttgaggccttcatgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaa 310  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23037365 actagtatttgaggccttgatgaaaagtgaatatcatgagttttcatcacctcgctggcacactcgggtgacgaaatgaccatattagaaacctctccaa 23037464  T
Q  311 gttgaagatgcatcactggtccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  23037465 gttgaagatgcatcactggtccatattttttggccaagtctcttaatttcctatggggttgagagcttaacagattgtgtatatttcctataataggtaa 23037564  T
Q  411 ctttataggccctggtgg 428  Q
    ||||||||||||||||||    
T  23037565 ctttataggccctggtgg 23037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 23146925 - 23147328
Alignment:
Q  19 ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa 118  Q
    ||||||||| ||||   |||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  23146925 ttgattggaattccgacctgtgaggcaatccatttggcaagattgaaaaacacttcttctctaattggttggtatgagttgaccctttttaggcttaaaa 23147024  T
Q  119 gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtat 218  Q
    ||||||  ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||  | || ||    
T  23147025 gctccagtgtgcagattttccgtagctgtctccaataattaccataaggagcaaaagctatacttgtggaattgtaagacattatttctgtagccaggat 23147124  T
Q  219 ttgaggccttcatgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaaga 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||  ||||||||||||||||||||||    
T  23147125 ttgaggccttgatgaaaagtgaatatcatgggttttcatcacctcactagcacactcgggggatgaaatgaccatagcagaaacctctccaagttgaaga 23147224  T
Q  319 tgcatcactggtccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttatag 418  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |||    
T  23147225 tgcatcactggtccatattttttcgccaagtctcttaatttttgatggggttgagagcttaacagattgtgtatatttcctataattggtaactttctag 23147324  T
Q  419 gccc 422  Q
    ||||    
T  23147325 gccc 23147328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 23040050 - 23040460
Alignment:
Q  19 ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa 118  Q
    ||||||||| |||| | | |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||| ||||| ||||    
T  23040050 ttgattggaattccgtcccgtgaagcaatccatttgacaagattggaaaacacttcttctctaattggttgatatgagttaaccctttttaggctcaaaa 23040149  T
Q  119 gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtat 218  Q
    ||||||| ||||| ||||| |||| |||||||||||||||||| || ||||||||||||||| |||| ||||||||||| |||||||||||  | || ||    
T  23040150 gctccaatgtgcaaattttccgtagctgtctccaataattaccatacggagcaaaagctatatttgtagaattgtaagacattatttctgtagccaggat 23040249  T
Q  219 ttgaggccttcatgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaaga 318  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||  ||||||||||||||||||||||    
T  23040250 ttgaggccttgatgcaaagtgaatatcatgggttttcattacctcgccagcacactcgggcgatgaaatgaccatagcagaaacctctccaagttgaaga 23040349  T
Q  319 tgcatcactggtccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttatag 418  Q
    |||||||  |||||||||||||||||||||||||||| |||  |||||||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  23040350 tgcatcaggggtccatattttttggccaagtctcttagttttcgatggggttgagaggttaacagattgtgtatatttcctataataggtaactttatag 23040449  T
Q  419 gccctggtggt 429  Q
    |||||||||||    
T  23040450 gccctggtggt 23040460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 23018259 - 23018663
Alignment:
Q  19 ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa 118  Q
    |||||||| | ||| |||| |||||||||| | |||| ||||||||| |  || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  23018259 ttgattggcgatccattctctgaagcaatcgacttgataagattggagaaaacctcttctctaatcggttggtatgagttgaccctttttaggcttaaaa 23018358  T
Q  119 gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtat 218  Q
    ||||||| ||||| ||||| |||  |||||||||||||| ||| ||||||| |||||  |||||||||||||||||||| ||||| ||  |  |||| |     
T  23018359 gctccaatgtgcaaattttacgtgcctgtctccaataatcaccataaggagaaaaagagatacttgtggaattgtaagacattatatcgatagctaggac 23018458  T
Q  219 ttgaggccttcatgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaaga 318  Q
    || |||||||  || |||||||||||||||||||||||| |||||  | ||| |||| | ||| |||||||| ||| ||||||| |||||||||||||||    
T  23018459 tttaggccttgttgcaaagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaaga 23018558  T
Q  319 tgcatcactggtccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttatag 418  Q
    |||||||  ||||||||||||||||||||||| ||||||||   ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||    
T  23018559 tgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctag 23018658  T
Q  419 gccct 423  Q
    |||||    
T  23018659 gccct 23018663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 34 - 342
Target Start/End: Original strand, 23033871 - 23034179
Alignment:
Q  34 ttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtgcaga 133  Q
    ||||| |||||||||  ||||||||||||||| |  || |||||||  || |||||||| |||||||||||||| ||||||||||||||||| |||||||    
T  23033871 ttctgcgaagcaatcgttttgacaagattggagaaaacctcttctcgtattggttggtacgagttgacccttttaaggcttaaaagctccaatgtgcaga 23033970  T
Q  134 tttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtatttgaggccttcatga 233  Q
    ||||||||| |||||||||||||||||| || |||| |||||||||| ||||||| |||||||| |||||||||||  |||| ||||||||||||  ||     
T  23033971 tttttcgtaactgtctccaataattaccatacggagaaaaagctatatttgtggagttgtaagacattatttctgtagctaggatttgaggccttgttgc 23034070  T
Q  234 aaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaagatgcatcactggtcca 333  Q
    |||||||||||||||||||||||||||||| |||||| |||| |  || |||||||| ||| ||||||||||||||||||||||||||||||  | ||||    
T  23034071 aaagtgaatatcatgggttttcatcacctccctagcaaactcagtggatgaaatgacaatagtagaaacctctccaagttgaagatgcatcaaggatcca 23034170  T
Q  334 tattttttg 342  Q
    |||| ||||    
T  23034171 tattgtttg 23034179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 40 - 419
Target Start/End: Original strand, 23025297 - 23025676
Alignment:
Q  40 gaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtgcagatttttc 139  Q
    |||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||||||| | ||| ||||| ||||||||||| ||||| |||||||    
T  23025297 gaagcaatccatttgacaagattggagaactcttcttctctaatcggctggtaggagttgacgcgttttaggctcaaaagctccaatgtgcaaatttttc 23025396  T
Q  140 gtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtatttgaggccttcatgaaaagtg 239  Q
     || |||||||||||||||||| ||||||| | || |||||| ||||||||||||||  ||||  ||||    |||   |||||||||   || |||||     
T  23025397 ttaactgtctccaataattaccataaggagaagaaactatacctgtggaattgtaagcaattaaatctgaagataggccttgaggcctggttgcaaagtt 23025496  T
Q  240 aatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaagatgcatcactggtccatatttt 339  Q
    ||||||||| |||||||||||||| |||||||| || ||||| |||||||| |||   |||| |||||||||||| ||||||||||  |||||||||| |    
T  23025497 aatatcatgagttttcatcacctccctagcacagtctggtgatgaaatgacaataaaggaaatctctccaagttggagatgcatcaagggtccatattct 23025596  T
Q  340 ttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttatagg 419  Q
     | |||||||||| || |||  |||| ||||||| |||||| ||||||||||||||||||||||| |||| |||| ||||    
T  23025597 cttgccaagtctcgtagttttcgatgtggttgagagcttaacagattgtgtatatttcctataattggtagctttctagg 23025676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 23141284 - 23141677
Alignment:
Q  30 tcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtg 129  Q
    |||||||| |||||  |||||||||||||||||||| | | ||||||||||||| || |||||||||||||| | ||| ||||| ||||||||| | |      
T  23141284 tcctttctttgaagttatccatttgacaagattggagaactcttcttctctaattggctggtatgagttgacgcgttttaggctcaaaagctccgaggca 23141383  T
Q  130 cagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtatttgaggccttc 229  Q
    || ||||||| || |||||||||||||||||| |||||||   ||  ||| | ||||||||| ||||| ||||  ||||   |||| | || |||||||     
T  23141384 caaatttttcttagctgtctccaataattaccataaggagatgaaattatgcctgtggaattataagaaattaaatctgaagctaggactttaggcctta 23141483  T
Q  230 atgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaagatgcatcactgg 329  Q
     || ||||| ||||||||| |||||||||||||| |||||||| || ||||| ||||| || ||  | |||| |||||||||||||||||||||||  ||    
T  23141484 ttgcaaagttaatatcatgagttttcatcacctccctagcacaatcaggtgatgaaattacaatcatggaaatctctccaagttgaagatgcatcaaggg 23141583  T
Q  330 tccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttataggccct 423  Q
    |||||||||| | ||||| ||||||| ||| | ||| |||||||  ||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  23141584 tccatattttctagccaaatctcttagttttttatgtggttgagaacttaacagattgtgtaaatttcctataataggtagctttataggccct 23141677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 40 - 423
Target Start/End: Original strand, 23149904 - 23150287
Alignment:
Q  40 gaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtgcagatttttc 139  Q
    ||||||||||||||||||||||| || ||| ||||||||||||| || ||||| |||||||| | ||| ||||| ||||||||||| ||||| |||||||    
T  23149904 gaagcaatccatttgacaagattagagagctcttcttctctaattggctggtaagagttgacgcgttttaggctcaaaagctccaatgtgcaaatttttc 23150003  T
Q  140 gtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtatttgaggccttcatgaaaagtg 239  Q
     || ||||||||||||||||||  ||| |||| ||||||||| ||| ||||| ||||| |||||  | |   ||||   | ||||||||  || |||||     
T  23150004 ttagctgtctccaataattaccacaagaagcagaagctatacctgtagaattataagaaattatcaccgaagctagcgatggaggccttattgcaaagtt 23150103  T
Q  240 aatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaagatgcatcactggtccatatttt 339  Q
    ||| ||||| |||||||||||||| |||||||| || | ||| ||||| || |   | |||| || ||||||||||||||||||||  ||||||||||||    
T  23150104 aatgtcatgagttttcatcacctccctagcacagtcagatgatgaaattacaaccatggaaatctgtccaagttgaagatgcatcaagggtccatatttt 23150203  T
Q  340 ttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttataggccct 423  Q
     | ||||| ||||||| ||| ||||| |||||||  ||||| |||||||||| |||||| ||||| |||| |||||||||||||    
T  23150204 ctagccaaatctcttagtttttgatgtggttgagaacttaacagattgtgtaaatttccaataattggtagctttataggccct 23150287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 359
Target Start/End: Original strand, 22987478 - 22987530
Alignment:
Q  307 ccaagttgaagatgcatcactggtccatattttttggccaagtctcttaattt 359  Q
    |||||||| ||||||||||  |||||||||||||| || || |||||||||||    
T  22987478 ccaagttgtagatgcatcaagggtccatatttttttgctaaatctcttaattt 22987530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 21780940 - 21781346
Alignment:
Q  19 ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa 118  Q
    |||||||| | ||| ||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  21780940 ttgattggcgatccattctgtgaaacaatccatctgacaagattggagagcacctcttctctaatcggttggtgtgagttgactcttttaaggcttaaaa 21781039  T
Q  119 gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtat 218  Q
    |||| || |||||||||||||||| |||| |||| || || || |||||||   | |||||| |||||  ||| ||||  ||||||||||    ||  |     
T  21781040 gctctaatgtgcagatttttcgtagctgtttccagtagttgccataaggagaccaggctatatttgtgccattataagtcattatttctgaagataagag 21781139  T
Q  219 ttgaggccttcatgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaaga 318  Q
     ||||||||| |   ||||| |||||||| |||||||||||||||  |||||||||| || || | |||||| ||| |||||||||||||||||||||||    
T  21781140 gtgaggccttgaaccaaagttaatatcattggttttcatcacctccttagcacactccggagatgtaatgacaatagtagaaacctctccaagttgaaga 21781239  T
Q  319 tgcatcactggtccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttatag 418  Q
    ||||||||||||||||||||||||||||||||||||||| |  ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |||    
T  21781240 tgcatcactggtccatattttttggccaagtctcttaatcttcgattgggttgagagcttaacagattgtgtatatttcctataataggtaactttctag 21781339  T
Q  419 gccctgg 425  Q
    |||||||    
T  21781340 gccctgg 21781346  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 14307656 - 14307706
Alignment:
Q  307 ccaagttgaagatgcatcactggtccatattttttggccaagtctcttaat 357  Q
    |||||||||||||||||||  ||||||||||||||||| || |||||||||    
T  14307656 ccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat 14307706  T

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Target: scaffold0554 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 5514 - 5109
Alignment:
Q  18 attgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaa 117  Q
    ||||||||| | ||| |||| |||||||||||||||||||||||  || || || |||||||| || |||||||| |||||||||||||| |||||||||    
T  5514 attgattggtgatccgttctctgaagcaatccatttgacaagatcagagagaacatcttctcttattggttggtaggagttgacccttttaaggcttaaa 5415  T
Q  118 agctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagta 217  Q
    ||||| || ||||| ||||||| ||  |||||||| |||||||||||||||||||||  |||| |||| ||||||||||  |||||||||    |||| |    
T  5414 agctcgaatgtgcatatttttcttacttgtctccagtaattaccgtaaggagcaaaaattatatttgttgaattgtaagtcattatttctacagctagaa 5315  T
Q  218 tttgaggccttcatgaaaagtgaatatcatgggttttcatcacctcgctagcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaag 317  Q
    |||||||||||  ||  |||| ||||||||| |||||||||||||| | |||  | || ||||| ||||| || ||| | ||||  ||||||||||||||    
T  5314 tttgaggccttgttgcgaagttaatatcatgagttttcatcacctctcgagcgtaatctggtgatgaaataacaatagttgaaatttctccaagttgaag 5215  T
Q  318 atgcatcactggtccatattttttggccaagtctcttaatttctgatggggttgagtgcttaaaagattgtgtatatttcctataataggtaactttata 417  Q
    ||||||||| ||||||||||||||||||||||| |||||||||  ||||||||||| |||||  | |||||| ||||||||||||||||||| |||| ||    
T  5214 atgcatcacgggtccatattttttggccaagtcacttaatttcctatggggttgagagcttagcaaattgtgaatatttcctataataggtagctttcta 5115  T
Q  418 ggccct 423  Q
    ||||||    
T  5114 ggccct 5109  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 23611543 - 23611593
Alignment:
Q  307 ccaagttgaagatgcatcactggtccatattttttggccaagtctcttaat 357  Q
    |||||||||||||||||||  ||||||||||||||||| || |||||||||    
T  23611543 ccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat 23611593  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 12611308 - 12611364
Alignment:
Q  303 ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaattt 359  Q
    |||||||||||| || |||||||  ||||||||  |||| |||||||||||||||||    
T  12611308 ctctccaagttgtaggtgcatcaagggtccataaattttcgccaagtctcttaattt 12611364  T

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