View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_17 (Length: 394)
Name: NF3538_high_17
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 40516206 - 40515834
Alignment:
| Q |
1 |
agacagtaacttagtacggatttgataggtcagctattttatagagaaagggttatatgtggggctggggctgctagaataatcaactttttactattca |
100 |
Q |
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| T |
40516206 |
agacagtaacttagtacggatttgataggtcagctattttatagagaaagggttatatgtggggctggggctgctagaataatcaactttttactattca |
40516107 |
T |
|
| Q |
101 |
catataagaaactactaaaaaataacagtgttcaggcttttgttgctgcttatgatacagattaattattattgtttatattattacagtgagtacagag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40516106 |
catataagaaacta---aaaaataacagtgttcaggcttttgttgctgcttatgatacagattaattattattgtttatattattaaagtgagtacagag |
40516010 |
T |
|
| Q |
201 |
agagatgcattttccccttcnnnnnnnctttcccttttggccccattccattgtcttgctatttattaaggtcatttatacatttggctatattgcaggt |
300 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40516009 |
agagatgcattttccccttctttttttcttttccttttggccccattccattgtcttgctatttattaaggtcatttatacatttggctatattgcaggt |
40515910 |
T |
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| Q |
301 |
gtacgaaatcctaagccactgataaaagccgaggaatgcggaattgctttactacaaggaaagggacagaatgtag |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40515909 |
gtacgaaatcctaagccactgataaaagccgaggaatgcggaattgctttactacaaggaaagggacagaatgtag |
40515834 |
T |
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