View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_2 (Length: 579)
Name: NF3538_high_2
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 23666870 - 23667254
Alignment:
| Q |
10 |
agcagcacagacaaaagctatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtct |
109 |
Q |
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| T |
23666870 |
agcaacacagacaaaagctatctctcctctccgtgtctttgtactacgtaggcagtaaatagttacctcagattccaaaaatgtcggtgtgtgtgggtct |
23666969 |
T |
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| Q |
110 |
caaagaagaaacatatcgaaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaat |
209 |
Q |
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| T |
23666970 |
caaagaagaaacatatcgaaagataaagcaaaaagaagcaagtaaataacacagcagtgtgggctaattttgcagaagctataatatatggtacgaaaat |
23667069 |
T |
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| Q |
210 |
gaggctcagaaattcatgcatgttctactttcatggatatgtgaactgttcaactgttaca-acccctttcaacagtgttttttaatcataatcgttcaa |
308 |
Q |
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| T |
23667070 |
gaggctcagaaattcatgcatgttctactttcatggatatgtgaactgttcaactgttacatacccctttcaacagtgttttttaatcataatcgttcaa |
23667169 |
T |
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| Q |
309 |
ccttcaacctctatagttttgtattaatccataatatgtagtatcaaaattataaggacgttattattcctttgtttcatttgca |
393 |
Q |
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| T |
23667170 |
ccttcaacctctatagttttgtattaatccataatatggagtatcaaaattataaggacgttattattcctttgtttcatttgca |
23667254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 453 - 562
Target Start/End: Original strand, 23667314 - 23667423
Alignment:
| Q |
453 |
caagagtggggacctatacaaccattaatgccagagaccgttaccaactttatagacactggttcagcagctagctggaataaatgtattcttttttcct |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23667314 |
caagagtggggacctatacaaccattaatgccagagaccgttaccaactttatagacactggttcagcagctagctggaataaatgtattcttttttcct |
23667413 |
T |
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| Q |
553 |
aaccagcatg |
562 |
Q |
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|||||||||| |
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| T |
23667414 |
aaccagcatg |
23667423 |
T |
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