View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_23 (Length: 302)
Name: NF3538_high_23
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29713563 - 29713703
Alignment:
| Q |
1 |
taaaagtagcacttataacgacactttgagattacttatgtagtgggaggttggatgagttcggttnnnnnnnnttgattttcgatctnnnnnnngggtt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
29713563 |
taaaagtagcacttataatgacactttgagattacttatgtagtgggaggttggatgagttcggttaaaaaaaattgattttcgatctaaaaaaagggtt |
29713662 |
T |
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| Q |
101 |
ttaaataaactttttccaaaatattattctctaaaacctat |
141 |
Q |
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| T |
29713663 |
ttaaataaactttttccaaaatattattctctaaaacctat |
29713703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 29713747 - 29713849
Alignment:
| Q |
185 |
catgtgtataatgagtagtgctacactaatcatcnnnnnnnnnnnnnccgtgaatgataaggaacataatattataggcatccattttgtaatgcttcaa |
284 |
Q |
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| T |
29713747 |
catgtgtataatgagtagtgctacactaatcatcaaaaataaaaaaaccgtgaatgataaggaacataatattataggcatccattttgtaatgcttcaa |
29713846 |
T |
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| Q |
285 |
agt |
287 |
Q |
| |
|
||| |
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|
| T |
29713847 |
agt |
29713849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27274658 - 27274598
Alignment:
| Q |
1 |
taaaagtagcacttataacgacactttgagattacttatgtagtgggaggttggatgagtt |
61 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27274658 |
taaaagtagtacttataatgacactttgagattacttatatagtgggaggttggatgagtt |
27274598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 55801780 - 55801715
Alignment:
| Q |
1 |
taaaagtagcacttataacgacactttgagattacttatgtagtgggaggttggatgagttcggtt |
66 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55801780 |
taaaagtagcacttataatgacactttgagattacttatgtagtgggaggttggatgagttcggtt |
55801715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 55801684 - 55801640
Alignment:
| Q |
97 |
ggttttaaataaactttttccaaaatattattctctaaaacctat |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55801684 |
ggttttaaataaactttttccaaaatattattctctaaaatctat |
55801640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 55801581 - 55801544
Alignment:
| Q |
238 |
atgataaggaacataatattataggcatccattttgta |
275 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |
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| T |
55801581 |
atgataaggaacataatattataagcatcccttttgta |
55801544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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