View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_33 (Length: 250)
Name: NF3538_high_33
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23089726 - 23089788
Alignment:
| Q |
1 |
ttaatcaaatatgtgtttatatatataaacggagaaagtattcaattgacgttaattatagac |
63 |
Q |
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| T |
23089726 |
ttaatcaaatatgtgtttatatatataaacggagaaagtattcaattgacgttaattatagac |
23089788 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 8077253 - 8077174
Alignment:
| Q |
127 |
cctaagtgggtaatacaacatgaaaacaaaagtagtataacaaacaaattgaattgagatctactaatgagcctaatgct |
206 |
Q |
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| T |
8077253 |
cctaagcgggtaataaaacatgaaaacaaaagtggtataacaaacaaatcggattgagattcagtaatgagcctaatgct |
8077174 |
T |
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