View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3538_high_34 (Length: 250)
Name: NF3538_high_34
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2486690 - 2486929
Alignment:
| Q |
1 |
acttgctagcagcagtatatataagactggatatacgcttctgttaaccgggtggtctgttacaaccgtaagtagggcaagttgaaacataaaagcataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
2486690 |
acttgctagcagcagtatatataagactggatatacgcttctgttaaccgggtggtctgttacaactgcaagtagggcaagttgaaacataaaagcataa |
2486789 |
T |
|
| Q |
101 |
ccaacgagaaggacgaagatgattgtgccatgtattgccattgcttcagcagcatcgatcgatgatatctttagtgccataaagagaaaatgtagcgagc |
200 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
2486790 |
ccaatgagaaggactgagatgattgtgttatgtattgccattgcttcagcagcatcgattgatgatatctttagtgccatgaagagaaaatgtagcaagc |
2486889 |
T |
|
| Q |
201 |
ataaacatatcgaatacttgactacttcctttaacctttg |
240 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2486890 |
ataaacatattgaatactttgctacttcctttaacctttg |
2486929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27089276 - 27089515
Alignment:
| Q |
1 |
acttgctagcagcagtatatataagactggatatacgcttctgttaaccgggtggtctgttacaaccgtaagtagggcaagttgaaacataaaagcataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
27089276 |
acttgctagcagcagtatatataagactggatatacgcttctgttaaccgggtggtctgttacaactgcaagtagggcaagttgaaacataaaagcataa |
27089375 |
T |
|
| Q |
101 |
ccaacgagaaggacgaagatgattgtgccatgtattgccattgcttcagcagcatcgatcgatgatatctttagtgccataaagagaaaatgtagcgagc |
200 |
Q |
| |
|
|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
27089376 |
ccaatgagaaggactgagatgattgtgttatgtattgccattgcttcagcagcatcgattgatgatatctttagtgccatgaagagaaaatgtagcaagc |
27089475 |
T |
|
| Q |
201 |
ataaacatatcgaatacttgactacttcctttaacctttg |
240 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
27089476 |
ataaacatattgaatactttgctacttcctttaacctttg |
27089515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University