View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_45 (Length: 219)
Name: NF3538_high_45
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_45 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35428455 - 35428669
Alignment:
| Q |
1 |
tcatgtgaattaaaaacgacacctaaatgagaatcaaaccaaacctattatgaccattgacattccatgaagagctagaggtgaaattgtctcattagtt |
100 |
Q |
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| T |
35428455 |
tcatgtgaattaaaaacgacacctaaatgagaaccaaaccaaacctattatgaccattgacattccatgaagag----aggtgaaattgtctcattagtt |
35428550 |
T |
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| Q |
101 |
tatctnnnnnnncacacaatgggtcacaattaatttatttttaaacaaataattttctgatggtaattttgtgggagaatcctcgaaacaaaatagatgt |
200 |
Q |
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| T |
35428551 |
tatctaaaaaaacacacaatgggtcacaattaatttctttttaaagaaataattttctgttggtaattttgtgggagaatcctcgaaacaaaatagatgt |
35428650 |
T |
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| Q |
201 |
atcttgaaatagtttaaat |
219 |
Q |
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| T |
35428651 |
atcttgaaatagtttaaat |
35428669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 35419321 - 35419534
Alignment:
| Q |
1 |
tcatgtgaattaaaaacgacacctaaatgagaatcaaaccaaacctattatgaccattgacattccatgaagagctagaggtgaaattgtctcattagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||||||||| |||| || |
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| T |
35419321 |
tcatgtgaattaaaaacgacacctaaatgagaatcaaaccaatgttattttgaccattgacattccatgaagtg----aggtgaaattgtctaattattt |
35419416 |
T |
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| Q |
101 |
tatctnnnnnnncaca--caatgggtcacaattaatttatttttaaacaaataattttctgatggtaattttgtg-ggagaatcctcgaaacaaaataga |
197 |
Q |
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| T |
35419417 |
tgtataaaaaatcacacacaatgggtcacaattgatttatttttaaacaaataattttttattggtaattttgtgtggagaaacctcgaaacaaaataga |
35419516 |
T |
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| Q |
198 |
tgtatcttgaaatagttt |
215 |
Q |
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| T |
35419517 |
tctatcttaaaatagttt |
35419534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 16436314 - 16436406
Alignment:
| Q |
1 |
tcatgtgaattaaaaacgacacctaaatgagaatcaaaccaaacctattatgaccattgacattccatgaagagctagaggtgaaattgtctcatta |
97 |
Q |
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||||| |||||||| || ||||||||| |||| ||||||| ||||| | |||||| ||||||||||| ||||| | ||||||||||||||||| |
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| T |
16436314 |
tcatgcgaattaaataccacacctaaagaagaagcaaaccatacctactttgaccaatgacattccataaagaggt----gtgaaattgtctcatta |
16436406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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