View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_5 (Length: 526)
Name: NF3538_high_5
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_5 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 33721077 - 33721326
Alignment:
| Q |
19 |
agattagcatagaaatgaaagtatatggagtagcaatctttgataaattaatagaattatgataggaatcattgttttgggagtttttatacgacaaaaa |
118 |
Q |
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| T |
33721077 |
agattagcatagaaatgaaagtatatggagtagcaatctttgataaattaatagaattatgataggaatcattgctgtgggagtttttataagacaaaaa |
33721176 |
T |
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| Q |
119 |
tcggagcatgaatgtataaaatcggagcacaattttgtggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggaca |
218 |
Q |
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| T |
33721177 |
tcggggcatgaatgtataaaatcggagcacaatcttgtggataacggtcaattcctactgtgtacgaactgcaaatcggggcacgaaatttctcaggaca |
33721276 |
T |
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| Q |
219 |
tgaccactattcaaggcttcgttcttcatgttttgaggtgacttccattc |
268 |
Q |
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| T |
33721277 |
tgaccactattcaaggcttcgttcttcatgttttgaggtgacttccattc |
33721326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 21219585 - 21219634
Alignment:
| Q |
48 |
gtagcaatctttgataaattaatagaattatgataggaatcattgttttg |
97 |
Q |
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| T |
21219585 |
gtagcaatctttgataaagtaatagaattatgataggaattattgttttg |
21219634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 277 - 473
Target Start/End: Complemental strand, 7462 - 7263
Alignment:
| Q |
277 |
tggcattggattcacttatgtctttgatcttt--ctttctttcaaatatgttgtttatctctttctttttccaaagcaccaggaccttacagtccaattt |
374 |
Q |
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| T |
7462 |
tggcattggattcacttgtgtctttgatatttttctttcttttaaatcttttgtttatctctttctttttccaaagcaccagaacctaacagtccaattt |
7363 |
T |
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| Q |
375 |
tgagaccaactcctattagtg-cagttcactagtaacaattacataagaacactcaataaatgtcctcaaaccgatgggcaaagtgaggtcctcaataaa |
473 |
Q |
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| T |
7362 |
ttagaccaattcctattagtgtcagttcactagtaacaattgcataagaacactcaataaatgtcctcaaacctatgggaaaagtgaggtcctcaataaa |
7263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 24944790 - 24944914
Alignment:
| Q |
138 |
aatcggagcacaattttgtggataacggtcaattcctgctgtgtacgaactgcaaattggggcacgaaatttctcaggacatgaccactattcaaggctt |
237 |
Q |
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| T |
24944790 |
aatcggagcacgattttgtggataaaggtcaattcgtactgtgtacaaacaacagttcggggcacaaaatttttcgggatataagcattattcaaggctt |
24944889 |
T |
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| Q |
238 |
cgttcttcatgttttgaggtgactt |
262 |
Q |
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| T |
24944890 |
cgctcttcatgttgtgaggtgactt |
24944914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 21657533 - 21657497
Alignment:
| Q |
52 |
caatctttgataaattaatagaattatgataggaatc |
88 |
Q |
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| T |
21657533 |
caatctttgataaaataatagaattgtgataggaatc |
21657497 |
T |
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