View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_high_9 (Length: 476)
Name: NF3538_high_9
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 5233091 - 5233548
Alignment:
| Q |
1 |
atggtaagatttcatataacgtggtactttacaataatgatgtaagtaatcgaagattatgagagtaannnnnnnnnnnnnn---aatctttggataggt |
97 |
Q |
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| T |
5233091 |
atggtaagatttcatataacgtggtactttacaataatgatgtaagtaatcgaagattatgagagtaattttttttttttttttaaatctttggataggt |
5233190 |
T |
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| Q |
98 |
atcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcattggtgaaaagaac |
197 |
Q |
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| T |
5233191 |
atcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcattggtgaaaagaac |
5233290 |
T |
|
| Q |
198 |
ataaagtttgattatttgattctaccaaattaccaaattaatatggtttaaattttatcattatattcacgtgtgtaaagtgtttcatatttaacatcga |
297 |
Q |
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| T |
5233291 |
ataaagtttgattatttgattctaccaaattaccaaattaatatggtttaaattttattattatattcacgtgtgtaaaatgtttcatatttaacattga |
5233390 |
T |
|
| Q |
298 |
tgctccatctttttctggtagttcaagtttacaccaaaagattggatgcagagatgttgtataatttatactactactactttacaaagccaaactattt |
397 |
Q |
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| T |
5233391 |
tgctccatctttttctggtagttcaagtttacaccaaaagattggatgcagagatgttgtataattta---tactactactttacaaagccaaactattt |
5233487 |
T |
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| Q |
398 |
tggtgaatattgttccatgaattatagagcttgtaactgagaagattgagcactatttatt |
458 |
Q |
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| T |
5233488 |
tggtgaatattgttccatgaattatagagcttgtaactgagaagattgagcactatttatt |
5233548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 17129075 - 17129208
Alignment:
| Q |
85 |
tctttggataggtatcatattcctcggtcatggttgagttcgagtgggaacgtcttggttgttctagaagaatggggaggtgaccctactggaatttcat |
184 |
Q |
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| T |
17129075 |
tctttcgacaggtatcatattcctcgatcatggctgaacccaagcgggaacgtcttggttgtgttggaagaatggggaggcgaccctaccggaatttcac |
17129174 |
T |
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| Q |
185 |
tggtgaaaagaacataaagtttgattatttgatt |
218 |
Q |
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| T |
17129175 |
tggtgaaaagaacatgaagtgtgctcatttgatt |
17129208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 52546585 - 52546538
Alignment:
| Q |
151 |
gaagaatggggaggtgaccctactggaatttcattggtgaaaagaaca |
198 |
Q |
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| T |
52546585 |
gaagaatggggaggtgaccctaatggaatatctttggtgaaaagaaca |
52546538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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