View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_10 (Length: 457)
Name: NF3538_low_10
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 42973785 - 42973342
Alignment:
| Q |
1 |
cgtattaacatgtatacaagttcagaatgttctctactacttatagtactaagaagcttgaagcatcagtggaaaactacataatattgcaactgcgcat |
100 |
Q |
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|||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42973785 |
cgtattaaaatgtatacaagttcaaaatgctctctactacttatagtactaagaagcttgaagcatcagtggaaaactacataatattgcaactgcgcat |
42973686 |
T |
|
| Q |
101 |
cccaactctcagagtcaatagtgagcatccccttatccaagcttctcaaattgagaaggatttattcatcatcatctctcatacatgtttagaagtactt |
200 |
Q |
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| T |
42973685 |
cgcaactctcagagtcaatagtgagcatccccttatccaagcttctcaaattgagaaggatttattgatcatcatctctcatacatgtttagaagtactt |
42973586 |
T |
|
| Q |
201 |
tcatatcgaagactgcatagttgaggaaacaaaactcttaaaaggtgcaacaagctttagcatcctaactgctaagtagaacaatttctgaaaacatcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42973585 |
tcatatcgaagactgcatagttgaggaaacaaaactcttaaaaggtgcaacaagctttagcatcctaactgctaagtagaacaatttctgaaaacatcag |
42973486 |
T |
|
| Q |
301 |
acaactcgcttttcaagcttgcattttaaatttgatttaccatgtcagtgcataacaaataacctcaatgaaaaattacaatagaataatatatatatcg |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42973485 |
acaactcgcttttcaagtttgcattttaaatttgatttaccatgtcagtgcataacaaataacctcaatgaaaaattacaatagaataatatatatatcg |
42973386 |
T |
|
| Q |
401 |
aatagatgtattgacctatcggcaaagttgttttcattgtccct |
444 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42973385 |
aatagatgtattggcctatcggcaaagttgttttcattgtccct |
42973342 |
T |
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