View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_12 (Length: 440)
Name: NF3538_low_12
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 48998943 - 48998511
Alignment:
| Q |
1 |
atcagacgaatatttcatttgttttggaaactgatttggtcgcgtttttgataaactcgatagaagatatggaagtgagtgagagagtcctttcaattct |
100 |
Q |
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| T |
48998943 |
atcagacgaatatttcatttgttttggaaactgatttggtcgtgtttttgataaactcgatagaagatatggaagtgagtgagagagtcctttcaattct |
48998844 |
T |
|
| Q |
101 |
gagcaatttggtgtcgagtcctgagggtagaaaagctataagtgccgttaaggatgcaatcacagttttggtcgatgtattgaattggacagattcacct |
200 |
Q |
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| T |
48998843 |
gagcaatttggtgtcgagtcctgagggtagaaaagctataagtgctgttaaggatgcaatcacagttttggtcgatgtattgaattggacagattcacct |
48998744 |
T |
|
| Q |
201 |
gaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagtcatgattgaggcagggattgtatcgtcattgc |
300 |
Q |
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| T |
48998743 |
gaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagccatgattgaggcagggattgtatcgtcattgc |
48998644 |
T |
|
| Q |
301 |
ttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcaggctagataaagggaagcaggtttctaggagctg |
400 |
Q |
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| T |
48998643 |
ttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcaggctagataaagggaagcaggtttctaggagctg |
48998544 |
T |
|
| Q |
401 |
tgatggtggaaacttaggtttaactgtctctgc |
433 |
Q |
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| T |
48998543 |
tgatggtggaaacttaggtttaactgtctctgc |
48998511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 42563939 - 42564055
Alignment:
| Q |
190 |
cagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaagtcatgattgaggcagggattgt |
289 |
Q |
| |
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||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||| |||| |||||| |||| ||| |||||||||| |||| | |
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| T |
42563939 |
cagattcacctaaatgtcaagagaatatttcatatattttgatgattatggcacgcaaagcttatgatgataggcaagccataattgaggcagagattat |
42564038 |
T |
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| Q |
290 |
atcgtcattgcttgagt |
306 |
Q |
| |
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| T |
42564039 |
atcgttgttgcttgagt |
42564055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 391
Target Start/End: Original strand, 2984885 - 2985108
Alignment:
| Q |
168 |
ttggtcgatgtattgaattggacagattcacctgaatgtcaagagaaggcttcatacattttgatgattatggcacataaagcctatgctgatagacaag |
267 |
Q |
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|||||||||||||||||||||| |||||||||||||| || || |||| ||| || ||||||||| ||||| | |||||| | |||| ||| | || | |
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| T |
2984885 |
ttggtcgatgtattgaattggaatgattcacctgaatgccaggaaaaggtttcgtatattttgatggttatgtcgcataaatcttatggtgacaagcagg |
2984984 |
T |
|
| Q |
268 |
tcatgattgaggcagggattgtatcgtcattgcttgagttgacgcttgtgggtacagccttggcgcagaaaagggcatccagaatactgcaatgtttcag |
367 |
Q |
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| T |
2984985 |
ccatgatagaggcagggattgtgtcgtcgcttcttgagttgtcgcttattggtactactttgactcagaaacgggcatcaaggctattggaaagtttgag |
2985084 |
T |
|
| Q |
368 |
gctagataaagggaagcaggtttc |
391 |
Q |
| |
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||||||||||||| |||||||| |
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| T |
2985085 |
aatagataaagggaaacaggtttc |
2985108 |
T |
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