View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_13 (Length: 440)
Name: NF3538_low_13
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Complemental strand, 16438974 - 16438554
Alignment:
| Q |
8 |
cgaagaaaatgtttaggggttggtagtgaaagatttgcagcacacgatgtttcattcggtcaactatcctagtactgctatcgcatataaacacacaact |
107 |
Q |
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| T |
16438974 |
cgaacaaaatgtttaggggttggtagtgaaagatttgcagcacacgatgtttcattcggtcaactatcctagtactgctatcgcatatgaacacacaact |
16438875 |
T |
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| Q |
108 |
gcgaagttctattgggatgatatgccttcgttctggtaaacatgatt-----gcagatacaaaaaagtgtaggatgatgataaatatctataaatctgaa |
202 |
Q |
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| T |
16438874 |
gcgaagttctattgggatgatataccttcgttctggtaaacatgattatattgcagatacaaaaaagtgtaggatgatgataaatatctataaatctgaa |
16438775 |
T |
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| Q |
203 |
tccatcaataaaatctacagataattataaattatagcaatataacaaaagattcaacatgctctgccgattaattacggattcattagctgcaaagtac |
302 |
Q |
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| T |
16438774 |
tccatcaataaaatctacagataattataaattatagcaatttaaccaaagattcaacatgctctgccgattaattacggattcattagctgcaaagtac |
16438675 |
T |
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| Q |
303 |
ctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgtatagattaa |
402 |
Q |
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| T |
16438674 |
ctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagctgaggtgtatagattaa |
16438575 |
T |
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| Q |
403 |
agttactattatacataaagg |
423 |
Q |
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| T |
16438574 |
agttactattatacataaagg |
16438554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 16416181 - 16416242
Alignment:
| Q |
313 |
ctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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| T |
16416181 |
ctggcaggtcttctggtttagggggaataggagccatgttgcaaaggaaagaatctttccaa |
16416242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 421
Target Start/End: Complemental strand, 16499812 - 16499709
Alignment:
| Q |
321 |
tcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaactggttggagc---tgaggtgtatagattaaagttactattataca |
417 |
Q |
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| T |
16499812 |
tcttctggtttagggggattaggagacatgttgtagaggaaagaatctttccaattagttgaagcttgtgaggtatatagagcaaaattactattataca |
16499713 |
T |
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| Q |
418 |
taaa |
421 |
Q |
| |
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|||| |
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| T |
16499712 |
taaa |
16499709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 16427080 - 16427158
Alignment:
| Q |
296 |
aaagtacctgattacggctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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| T |
16427080 |
aaagtacctgcatacagctggaaggtcttctggtttggggggattaggagccctgttacaaaggaaggtatctttccaa |
16427158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 16442690 - 16442752
Alignment:
| Q |
312 |
gctggcaggtcttctggtttaggtggattaggagccatgttgcataagaaagtatctttccaa |
374 |
Q |
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||||| ||||||||||||||||| ||||||||||||| ||| || | ||| |||||||||||| |
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| T |
16442690 |
gctggaaggtcttctggtttagggggattaggagccaagttacaaaggaaggtatctttccaa |
16442752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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