View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3538_low_14 (Length: 439)

Name: NF3538_low_14
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3538_low_14
NF3538_low_14
[»] chr1 (26 HSPs)
chr1 (6-425)||(48048641-48049061)
chr1 (184-425)||(48040172-48040413)
chr1 (1-191)||(48040584-48040774)
chr1 (301-425)||(29812771-29812897)
chr1 (300-426)||(48049405-48049530)
chr1 (296-425)||(48042834-48042963)
chr1 (300-425)||(48055942-48056067)
chr1 (317-425)||(48053126-48053234)
chr1 (300-414)||(48054322-48054436)
chr1 (301-425)||(48050608-48050734)
chr1 (300-425)||(48035757-48035884)
chr1 (348-430)||(22908318-22908400)
chr1 (300-426)||(48041322-48041444)
chr1 (348-425)||(5126503-5126580)
chr1 (348-425)||(48033102-48033179)
chr1 (6-296)||(29813279-29813569)
chr1 (349-424)||(39972782-39972857)
chr1 (306-425)||(29813602-29813721)
chr1 (353-425)||(48034710-48034782)
chr1 (353-424)||(48042225-48042296)
chr1 (348-421)||(48050016-48050089)
chr1 (352-425)||(48054678-48054751)
chr1 (348-420)||(48036725-48036797)
chr1 (176-277)||(48053238-48053339)
chr1 (1-42)||(22090019-22090060)
chr1 (243-296)||(29812683-29812736)
[»] chr6 (6 HSPs)
chr6 (352-431)||(10754596-10754675)
chr6 (353-439)||(10750280-10750366)
chr6 (352-424)||(992441-992513)
chr6 (300-426)||(32678573-32678691)
chr6 (353-424)||(18613088-18613159)
chr6 (353-427)||(10748684-10748758)
[»] chr2 (7 HSPs)
chr2 (349-428)||(6796493-6796572)
chr2 (347-425)||(35926119-35926197)
chr2 (348-429)||(6801049-6801130)
chr2 (353-428)||(7181560-7181635)
chr2 (349-424)||(39990580-39990655)
chr2 (353-424)||(13326996-13327067)
chr2 (352-427)||(35920133-35920208)
[»] chr3 (7 HSPs)
chr3 (349-426)||(31125751-31125828)
chr3 (348-424)||(34974803-34974879)
chr3 (349-424)||(53107639-53107714)
chr3 (353-430)||(47565677-47565754)
chr3 (353-424)||(38930471-38930542)
chr3 (353-424)||(53682982-53683053)
chr3 (364-415)||(32170503-32170554)
[»] chr4 (3 HSPs)
chr4 (348-424)||(38393558-38393634)
chr4 (348-425)||(49152530-49152607)
chr4 (362-419)||(26929298-26929355)
[»] chr7 (4 HSPs)
chr7 (349-424)||(43920607-43920682)
chr7 (353-424)||(23780469-23780540)
chr7 (348-424)||(40706106-40706182)
chr7 (362-419)||(46064797-46064854)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 48049061 - 48048641
Alignment:
Q  6 gtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctcatgcaactacgca 105  Q
    |||||||||| ||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||| |||||||| |||| || ||    
T  48049061 gtctagtattgccactcatcaagtacagcatcctcatggacctcaatcctttttgtgctggctttttactacccaacactctatctcatacaacaacaca 48048962  T
Q  106 gctttt-catatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctactagtacaatattc 204  Q
    |||||| ||||||||||||| |||||||||| | |||||| |||||||||| |||||||| |||| ||||||||||||| |||||||||||||| | |||    
T  48048961 gctttttcatatgattataacagaaattagtcatcaattgaaattgaaaagggagagttcatgatattaggacataactttggctactagtacattcttc 48048862  T
Q  205 atgtatcacagtattcatctcaaggcataaaaactggggcttatgggcatttaattaaccaattaataagtcaaccttatcaacttccagatgaccttat 304  Q
    ||||||||||| |||||||||||||||||| ||| |  | | ||||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||    
T  48048861 atgtatcacagcattcatctcaaggcataacaaccgatgttaatgggtatttaattaaccaattaataagtcaaccttatcaacttcgagatgagcctat 48048762  T
Q  305 ttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatca 404  Q
    ||||||||||||||||||||||||||||||| | | | ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |    
T  48048761 ttgtatttaactaaaatattaaaaagttaaact-caggccttcaaaagggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatga 48048663  T
Q  405 taccacta-gaccaaatgccct 425  Q
    |||||||| |||||||||||||    
T  48048662 taccactaggaccaaatgccct 48048641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 184 - 425
Target Start/End: Complemental strand, 48040413 - 48040172
Alignment:
Q  184 ctggctactagtacaatattcatgtatcacagtattcatctcaaggcataaaaactggggcttatgggcatttaattaaccaattaataagtcaacctta 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48040413 ctggctactagtacaatattcatgtatcacagtattcatctcaaggcataaaaactggggcttatgggtatttaattaaccaattaataagtcaacctta 48040314  T
Q  284 tcaacttccagatgaccttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040313 tcaacttccagatgaccttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctc 48040214  T
Q  384 tcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48040213 tcgcacccaaagcgagaatcataccactagaccaaatgccct 48040172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 48040774 - 48040584
Alignment:
Q  1 atcctgtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctcatgcaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040774 atcctgtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctcatgcaact 48040675  T
Q  101 acgcagcttttcatatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctac 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48040674 acgcagcttttcatatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctac 48040584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 29812771 - 29812897
Alignment:
Q  301 ttatttgtatttaactaaaa--tattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 398  Q
    |||||||||||| | |||||  |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29812771 ttatttgtatttgattaaaaagtattgaaaagttaaactcctaaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 29812870  T
Q  399 gaatcataccactagaccaaatgccct 425  Q
    |||||||||||||||||||||||||||    
T  29812871 gaatcataccactagaccaaatgccct 29812897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 300 - 426
Target Start/End: Complemental strand, 48049530 - 48049405
Alignment:
Q  300 cttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgag 399  Q
    |||||| |||||||||||| |||||  ||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48049530 cttattggtatttaactaatatattggaaagttaacctcctaaccttcaaaa-ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgag 48049432  T
Q  400 aatcataccactagaccaaatgccctt 426  Q
    |||||||||||||||||||||||||||    
T  48049431 aatcataccactagaccaaatgccctt 48049405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 296 - 425
Target Start/End: Complemental strand, 48042963 - 48042834
Alignment:
Q  296 tgaccttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaag 395  Q
    |||||||||||||||||||||||||| || |||| | |||  ||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||||    
T  48042963 tgaccttatttgtatttaactaaaatgttgaaaaataaaacccctaaccttcaaaaaggggcattcagagaatcgaactccgggcctctcgcacccaaag 48042864  T
Q  396 cgagaatcataccactagaccaaatgccct 425  Q
    ||||||||||||||||||||||||||||||    
T  48042863 cgagaatcataccactagaccaaatgccct 48042834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 300 - 425
Target Start/End: Complemental strand, 48056067 - 48055942
Alignment:
Q  300 cttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgag 399  Q
    ||||||||||| |||||||||| || |||| | ||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  48056067 cttatttgtatataactaaaatgttgaaaaataaaactcctaaccttcaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgag 48055968  T
Q  400 aatcataccactagaccaaatgccct 425  Q
    ||||||||||||||||||||||||||    
T  48055967 aatcataccactagaccaaatgccct 48055942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 317 - 425
Target Start/End: Complemental strand, 48053234 - 48053126
Alignment:
Q  317 aaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagacc 416  Q
    |||||||| |||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  48053234 aaaatattgaaaagttaaacttctaaccttcaaaaaggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagacc 48053135  T
Q  417 aaatgccct 425  Q
    |||||||||    
T  48053134 aaatgccct 48053126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 300 - 414
Target Start/End: Complemental strand, 48054436 - 48054322
Alignment:
Q  300 cttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgag 399  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  48054436 cttatttgtatttaactaaaatattgaaaagttaaactcctgaccttcgaaaagcggcattctgagaatcgaactcaggacctctcgcacccaaagcgag 48054337  T
Q  400 aatcataccactaga 414  Q
    ||||||  |||||||    
T  48054336 aatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 301 - 425
Target Start/End: Complemental strand, 48050734 - 48050608
Alignment:
Q  301 ttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaa--ggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 398  Q
    |||||||| |||||||||||| || |||| | ||| |||| ||||||| |||  ||||||||| ||||||||||||| ||||||||||||||||||||||    
T  48050734 ttatttgtctttaactaaaatgttgaaaaataaaactcctaaccttcacaaaagggggcattcggagaatcgaactccggacctctcgcacccaaagcga 48050635  T
Q  399 gaatcataccactagaccaaatgccct 425  Q
    |||||||||||||||||||||||||||    
T  48050634 gaatcataccactagaccaaatgccct 48050608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 300 - 425
Target Start/End: Complemental strand, 48035884 - 48035757
Alignment:
Q  300 cttatttgtatttaactaaaatattaaaaagttaaattcctgaccttca--aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcg 397  Q
    ||||||| |||||||  ||||| || |||| ||||| || | |||||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48035884 cttatttctatttaaaaaaaatgttgaaaatttaaactcttaaccttcacaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcg 48035785  T
Q  398 agaatcataccactagaccaaatgccct 425  Q
    ||||||||||||||||||||||||||||    
T  48035784 agaatcataccactagaccaaatgccct 48035757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 348 - 430
Target Start/End: Complemental strand, 22908400 - 22908318
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttttg 430  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22908400 aaaaaggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccctttttg 22908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 300 - 426
Target Start/End: Complemental strand, 48041444 - 48041322
Alignment:
Q  300 cttatttgtatttaact-aaaatattaaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcga 398  Q
    ||||||||||||||||| ||||||||  ||||||||||     ||| |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||    
T  48041444 cttatttgtatttaacttaaaatattggaaagttaaata----accatcaaaa-ggggcattcggagaatcgaactccggacctctcgcacccaaagcga 48041350  T
Q  399 gaatcataccactagaccaaatgccctt 426  Q
    ||||||||||||||||||||||||||||    
T  48041349 gaatcataccactagaccaaatgccctt 48041322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 5126580 - 5126503
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5126580 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 5126503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 48033179 - 48033102
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033179 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48033102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 296
Target Start/End: Original strand, 29813279 - 29813569
Alignment:
Q  6 gtctagtatttccactcatccaatacagcatcctcatggacctcagtcctttctgtgctggctttttgttacccaacactttatctcatgcaactacgca 105  Q
    ||||||||||||| |||||||| | ||||||||||||||||| || || ||| |||| |||||||||   || |||||||| ||||||  |||| | |||    
T  29813279 gtctagtatttcccctcatccattgcagcatcctcatggaccacaatcttttttgtgttggcttttt---actcaacacttcatctcagacaacaatgca 29813375  T
Q  106 gctttt-catatgattataaaagaaattagttaccaattgtaattgaaaagtgagagttcgtgatgttaggacataactctggctactagtacaatattc 204  Q
     ||||| || |||||||||||||||| || ||  |||||||||||  |||  |||| ||  | |  |||||||| || ||||| ||||| |||| ||| |    
T  29813376 actttttcacatgattataaaagaaactatttgtcaattgtaattttaaatggagactttatcacattaggacaaaaatctggatactaatacattatac 29813475  T
Q  205 atgtatcacagtattcatctca-aggcataaaaactggggcttatgggcattt-aattaaccaattaataagtcaaccttatcaacttccagat 296  Q
    ||||||||||| ||||||||   |||| |||||||||  | ||||||| |||| || ||||||||||||||||||||||| ||| |||||||||    
T  29813476 atgtatcacagcattcatctttgaggcttaaaaactgatgtttatgggtattttaactaaccaattaataagtcaaccttgtcagcttccagat 29813569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 39972782 - 39972857
Alignment:
Q  349 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972782 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 425
Target Start/End: Original strand, 29813602 - 29813721
Alignment:
Q  306 tgtatttaactaaaatatt-aaaaagttaaattcctgaccttcaaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatca 404  Q
    |||||| |||||||||||| ||||||||||| || | |||||||||| |||||| || |  |||||||||| ||||||||||||||||||||||||||||    
T  29813602 tgtattaaactaaaatattgaaaaagttaaactcttaaccttcaaaa-ggggcactcagcaaatcgaactcaggacctctcgcacccaaagcgagaatca 29813700  T
Q  405 taccactagaccaaatgccct 425  Q
     ||||||||||||||||||||    
T  29813701 aaccactagaccaaatgccct 29813721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 48034782 - 48034710
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034782 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 48034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 48042296 - 48042225
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 48042225  T

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Target: chr1; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 348 - 421
Target Start/End: Complemental strand, 48050089 - 48050016
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 421  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  48050089 aaaatggggcattccgagaatcgaactcggaacctctcacacccaaagcgagaatcataccactagaccaaatg 48050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 352 - 425
Target Start/End: Complemental strand, 48054751 - 48054678
Alignment:
Q  352 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  48054751 aggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccct 48054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 48036797 - 48036725
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaat 420  Q
    |||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  48036797 aaaaaggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaat 48036725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 48053339 - 48053238
Alignment:
Q  176 acataactctggctactagtacaatattcatgtatcacagtattcatctcaaggcataaaaactggggcttatgggcatttaattaaccaattaataagt 275  Q
    |||||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||||  || |||||| |||||  ||||||| ||| ||||    
T  48053339 acataagtctggctactagttcattattcaagtatcacagcattcatctcaaggcataaaaactgatgcctatgggtatttatctaaccaaataaaaagt 48053240  T
Q  276 ca 277  Q
    ||    
T  48053239 ca 48053238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22090060 - 22090019
Alignment:
Q  1 atcctgtctagtatttccactcatccaatacagcatcctcat 42  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  22090060 atcctgtctagtcttaccactcatccaacacagcatcctcat 22090019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 29812683 - 29812736
Alignment:
Q  243 gcttatgggcatttaattaaccaattaataagtcaaccttatcaacttccagat 296  Q
    ||||||||| |||||| |||||||||||||||||||| || ||| || ||||||    
T  29812683 gcttatgggtatttaactaaccaattaataagtcaactttgtcagctaccagat 29812736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 10754596 - 10754675
Alignment:
Q  352 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttttga 431  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10754596 aggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctttttga 10754675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 353 - 439
Target Start/End: Original strand, 10750280 - 10750366
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttttgacatttctc 439  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccctttttgacatttctc 10750366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 992441 - 992513
Alignment:
Q  352 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  992441 aggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 992513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 426
Target Start/End: Original strand, 32678573 - 32678691
Alignment:
Q  300 cttatttgtatttaactaaaatattaaaaagttaaattcctgaccttcaaaaag-gggcattccgagaatcgaactcgggacctctcgcacccaaagcga 398  Q
    ||||||||||||||||||||||||| |||||||||| |||| | | |||||||  |||||||         |||||| ||||||||| ||||||||||||    
T  32678573 cttatttgtatttaactaaaatattgaaaagttaaactcctaatcatcaaaaaatgggcatt---------gaactcaggacctctcacacccaaagcga 32678663  T
Q  399 gaatcataccactagaccaaatgccctt 426  Q
    ||||||||||||||||||||||||||||    
T  32678664 gaatcataccactagaccaaatgccctt 32678691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 18613159 - 18613088
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgccc 18613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 427
Target Start/End: Original strand, 10748684 - 10748758
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttt 427  Q
    |||||||||||||||| || |||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgcccttt 10748758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 6796572 - 6796493
Alignment:
Q  349 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttt 428  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796572 aaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttt 6796493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 347 - 425
Target Start/End: Original strand, 35926119 - 35926197
Alignment:
Q  347 caaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35926119 caaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccct 35926197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 348 - 429
Target Start/End: Original strand, 6801049 - 6801130
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttttt 429  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6801049 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccatttt 6801130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 353 - 428
Target Start/End: Complemental strand, 7181635 - 7181560
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttt 428  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7181635 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttt 7181560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 39990655 - 39990580
Alignment:
Q  349 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39990655 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 13326996 - 13327067
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13326996 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 13327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 35920133 - 35920208
Alignment:
Q  352 aggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgcccttt 427  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  35920133 aggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgcccttt 35920208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 31125828 - 31125751
Alignment:
Q  349 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctt 426  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31125828 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctt 31125751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 34974879 - 34974803
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34974879 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 53107714 - 53107639
Alignment:
Q  349 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53107714 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 53107639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 430
Target Start/End: Original strand, 47565677 - 47565754
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctttttg 430  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47565677 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctgtttg 47565754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 353 - 424
Target Start/End: Original strand, 38930471 - 38930542
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 53683053 - 53682982
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53683053 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 32170554 - 32170503
Alignment:
Q  364 agaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagac 415  Q
    |||||| |||| | |||||||||||||| |||| ||||||||||||||||||    
T  32170554 agaatcaaacttgcgacctctcgcaccccaagctagaatcataccactagac 32170503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 38393558 - 38393634
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38393558 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 49152530 - 49152607
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 425  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49152530 aaaatggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccct 49152607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  362 cgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaa 419  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 43920682 - 43920607
Alignment:
Q  349 aaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43920682 aaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 43920607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 23780540 - 23780469
Alignment:
Q  353 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 23780469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 40706182 - 40706106
Alignment:
Q  348 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 424  Q
    |||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  40706182 aaaatggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgccc 40706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  362 cgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaa 419  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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