View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3538_low_15 (Length: 415)
Name: NF3538_low_15
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 41571339 - 41570951
Alignment:
| Q |
11 |
cagagaattcaaattttgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571339 |
cagagaattcaaattttgaagtttggaaaagtatttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttg |
41571240 |
T |
|
| Q |
111 |
aaaatagattcaggaatatcgccttgtagcttgttgctgcatagttttagataccacaaagaatatgatgagactgcacttatatttccagtaaactgat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571239 |
aaaatagattcaggaatatcgccttgtagcttgttgctgcatagttttagataccacaaagaatatgatgagactgcacttatatttccagtaaactgat |
41571140 |
T |
|
| Q |
211 |
tatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttttccacttagtaaattgttatttaatagtaaataacctaagtt |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571139 |
tatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttttccacttagtaaattgttatttaatagtaaataacctaagtt |
41571040 |
T |
|
| Q |
311 |
ttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaatcaaagtaatcaagttgagacaagttaaacaatg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41571039 |
ttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaatcaaagtaatcaagttgagacaagttaaacaatg |
41570951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 34239886 - 34239714
Alignment:
| Q |
11 |
cagagaattcaaattttgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttg |
110 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||||| || ||||||||||| ||||||||||||||||||||| || ||||||||| |||||||| |||||||| |
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| T |
34239886 |
cagagaatccaatttttgaagttttgtaaagtcttgaaaattgacaacaccactcaagttgtttgatgatagacatagtgtaattaggtttgcaaggttg |
34239787 |
T |
|
| Q |
111 |
aaaatagattcaggaatatcgccttgtagcttgttgctgcatagttttagataccacaaagaatatgatgaga |
183 |
Q |
| |
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||||| || | |||||||| ||||||||||||||| ||||||| ||||||| || ||||||||||||| |
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|
| T |
34239786 |
aaaattgaatttggaatatcaccttgtagcttgttgttgcatagagatagatactctaaggaatatgatgaga |
34239714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 34232131 - 34232000
Alignment:
| Q |
14 |
agaattcaaattttgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaa |
113 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| || || | || || ||||||||||||||| |
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|
| T |
34232131 |
agaatacaaattttgaagtttgccaaagtgttgaaaattgacaacaccactcaagttgtttgatgatagatctaatacagctaaatttacaaggttgaaa |
34232032 |
T |
|
| Q |
114 |
atagattcaggaatatcgccttgtagcttgtt |
145 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||||| |
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|
| T |
34232031 |
attgattctggaatattgccttgtagcttgtt |
34232000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 42129656 - 42129785
Alignment:
| Q |
18 |
ttcaaattttgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatag |
117 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| | || | ||||||||||||||||||| || ||| ||||| |||| ||||||||||||||| |
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| T |
42129656 |
ttcaaatattgaagtttggaaaagtgttgaaaatcaataacatcactcaagttgtttgatgatagatctagcaaagttaagtttgcaaggttgaaaatag |
42129755 |
T |
|
| Q |
118 |
attcaggaatatcgccttgtagcttgttgc |
147 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |
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|
| T |
42129756 |
attttggaatattgccttgtagcttgttgc |
42129785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 41712868 - 41712744
Alignment:
| Q |
23 |
attttgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattca |
122 |
Q |
| |
|
||||||||||| ||| |||| || ||||| |||| |||||| |||||||||||||| ||| |||| |||||||||||| ||| |||||||| ||||| |
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|
| T |
41712868 |
attttgaagttcggagaagtattgaaaatcaacaacaccactgaagttgtttgatgataggtctagtctagttaggtttataagtttgaaaattgattct |
41712769 |
T |
|
| Q |
123 |
ggaatatcgccttgtagcttgttgc |
147 |
Q |
| |
|
||||||| ||||| ||| ||||||| |
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|
| T |
41712768 |
ggaatattgccttctagtttgttgc |
41712744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 41432337 - 41432452
Alignment:
| Q |
36 |
gaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattcaggaatatcgcctt |
135 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||| || || || | |||| ||||||||||||||||||| ||||| ||||||| |||| |
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|
| T |
41432337 |
gaaaagagtttaaaattgacaaaaccactcaagttatttgaagatagacacaagttagtaaggtttacaaggttgaaaagtgattctggaatatttcctt |
41432436 |
T |
|
| Q |
136 |
gtagcttgttgctgca |
151 |
Q |
| |
|
||| | ||||| |||| |
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|
| T |
41432437 |
gtaacatgttgttgca |
41432452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 8523811 - 8524192
Alignment:
| Q |
18 |
ttcaaattttgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatag |
117 |
Q |
| |
|
||||||| |||||| ||||||| || || |||||||||| ||||||||||||||||||||| || |||| || |||||||| ||||||||||||| | |
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|
| T |
8523811 |
ttcaaatgttgaaggttggaaatgttttggaaattgacaacaccactcaagttgtttgatgatagatctagtctacttaggtttgcaaggttgaaaatgg |
8523910 |
T |
|
| Q |
118 |
attcaggaatatcgccttgtagcttgttgctgcatagttttagataccacaaagaatatgatgagactgcacttatatttccagtaaactgattatttga |
217 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| | | ||| |||| || || ||||||||||||| ||| || ||||| || |||| ||||||||||| |
|
|
| T |
8523911 |
attctggaatattgccttgtagcctgttgttacttagagatagaaactctaaggaatatgatgagattgcgctgatattccctgtaagttgattatttga |
8524010 |
T |
|
| Q |
218 |
tagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttttccacttagtaaattgttatttaatagtaaataacctaagttttgaaac |
317 |
Q |
| |
|
|| ||| || | | |||| |||| | |||||| | | | ||||||| | ||| |||| || |||| ||||||| | |||| | || ||||||| |
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|
| T |
8524011 |
taaatctaatactagcaaaaatggcaaggataacaaggagggaggaattgtaccatttagcaagttgtcatttaatcgcaaattagttagcttttgaaga |
8524110 |
T |
|
| Q |
318 |
cctgttattttgttgggtagaggaccctttaatttattataagaacaatc-aaagtaatcaagttgagacaagttaaacaatg |
399 |
Q |
| |
|
||||| |||||||||||| ||||| | ||||||||||| ||||||||| ||||||| |||| |||| ||||||||| |||| |
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|
| T |
8524111 |
cctgtagttttgttgggtaagggaccatctaatttattatgagaacaatctaaagtaa-caagatgagtcaagttaaataatg |
8524192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 131 - 276
Target Start/End: Original strand, 30019839 - 30019982
Alignment:
| Q |
131 |
gccttgtagcttgttgctgcatagttttagataccacaaagaatatgatgagactgcacttatatttccagtaaactgattatttgatagatccaacatt |
230 |
Q |
| |
|
||||||||||| |||||||| ||||||||| | ||||||||| ||||||||| ||||||| |||||| ||||| | || |||||||||||||| || |
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|
| T |
30019839 |
gccttgtagctcattgctgcaaagttttagaaatcacaaagaacatgatgagattgcacttctatttcttgtaaatttat--tttgatagatccaatctt |
30019936 |
T |
|
| Q |
231 |
gtcaaagatggtatggataaacaccatgaaggaatttttccactta |
276 |
Q |
| |
|
|||| |||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
30019937 |
gtcatagatggtaaatataaacatcatgaagaaatttttccactta |
30019982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 25522333 - 25522203
Alignment:
| Q |
29 |
aagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattcaggaata |
128 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||| | || || ||| ||||||||||| ||| |||||||| ||||| |||||| |
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|
| T |
25522333 |
aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata |
25522234 |
T |
|
| Q |
129 |
tcgccttgtagcttgttgctgcatagtttta |
159 |
Q |
| |
|
| |||||||||||||||| || |||| |||| |
|
|
| T |
25522233 |
ttgccttgtagcttgttgttgtatagattta |
25522203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 25522053 - 25521996
Alignment:
| Q |
309 |
ttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaat |
366 |
Q |
| |
|
||||| |||||| | |||||||| |||| |||||||| ||||||||||| |||||||| |
|
|
| T |
25522053 |
ttttggaaccctataattttgttaggtaaaggaccctctaatttattattagaacaat |
25521996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 12249264 - 12249382
Alignment:
| Q |
27 |
tgaagtttggaaaagtgtttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattcaggaa |
126 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| ||||||||||||||||||||| | |||| |||||||| || |||||||||||| |||| |||| |
|
|
| T |
12249264 |
tgaagtttggaaaagagttgaaaatcaacaacaccactcaagttgtttgatgataaatctagtctagttagggttgtaaggttgaaaatggattttggaa |
12249363 |
T |
|
| Q |
127 |
tatcgccttgtagcttgtt |
145 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
12249364 |
tattgccttgtagcttgtt |
12249382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 11118934 - 11118981
Alignment:
| Q |
32 |
tttggaaaagtgtttaaaattgacaataccactcaagttgtttgatga |
79 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11118934 |
tttggagaagagtttaaaattgacaacaccactcaagttgtttgatga |
11118981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 11119142 - 11119232
Alignment:
| Q |
309 |
ttttgaaaccctgttattttgttgggtagaggaccctttaatttattataagaacaatcaaagtaatcaagttgagacaagttaaacaatg |
399 |
Q |
| |
|
||||| |||||||| ||||||||||| || ||||| | ||||||||||| ||||||| | || | ||||||||| ||||||||| |||| |
|
|
| T |
11119142 |
ttttggaaccctgtaattttgttgggcaggggaccatctaatttattattagaacaacctaatgcaacaagttgagtcaagttaaataatg |
11119232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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