View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_16 (Length: 410)
Name: NF3538_low_16
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Complemental strand, 6412285 - 6411905
Alignment:
| Q |
15 |
aattacttgtgtttaaagttattaggtcattgatagacactgatttgagaaagttagaataactttatggtggaagggatttgatcaaggttcacttatg |
114 |
Q |
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| T |
6412285 |
aattacttgtgtttaaagttattaggtcattgatagacactgatttgggaaagttagaataactttatggtggaagggatttgatcaaagttcacttatg |
6412186 |
T |
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| Q |
115 |
aattatgactcacggtgtaagttgaaaaggaaatgcatatatgttggatgattccttttgaacttttagtaaaaccgtgtattcaacacaaataatgccc |
214 |
Q |
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| T |
6412185 |
aattatgactcacggtgtaagttgaaaaggaaatgcatatatgttggatgattccttttgaacttttagta----------ttcaacacaaataatgccc |
6412096 |
T |
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| Q |
215 |
cacttgctgagttgaatcctattctcatgtcactattaatttgttacttttgtataccaaagttttggcgaatccttcaatgagtacataacattttgtg |
314 |
Q |
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| T |
6412095 |
cgcttgctgagttgaatcctattctcatgtcactattaatttgttacttttgtataccaaagttttggcgaatccttcaatgagtacagaacattttgtg |
6411996 |
T |
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| Q |
315 |
aaggcatatatttcatcaaaactacacaa----agacttctacttacaccaaagcaatatcaaaccaaattgagttggatttaaaccataa |
401 |
Q |
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| T |
6411995 |
aaggcatatatttcatcaaaactacacaaagacagacttctacttacaccaaagcaatatcaaaccaaattgagttggatttaaaccataa |
6411905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 22 - 395
Target Start/End: Complemental strand, 6409537 - 6409162
Alignment:
| Q |
22 |
tgtgtttaaagttattaggtcattgatagacactgatttgagaaagttagaataactttatggtggaagggatttgatcaaggttcacttatgaattatg |
121 |
Q |
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| T |
6409537 |
tgtgtttaaagttattaactaattgatagacacagatttggaaaaattagaataactttttggtggaatggatttgagcaaggttcacttatgagttatg |
6409438 |
T |
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| Q |
122 |
actcacggtgtaagttgaaaaggaaatgcatatatgttggatgattccttttgaacttttagtaaaaccgtgtattcaacacaaataatgccccacttgc |
221 |
Q |
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| T |
6409437 |
actcacggtgtaagttgaatttgaaatgcatatatgttgggtgattccttttgaacttttagtaaaaccgtgtattcaacacaaataatgccccacttgc |
6409338 |
T |
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| Q |
222 |
tgagttgaatcctattctcatgtcactattaatttgttacttttgtataccaaagttttggcgaatccttcaatgagtacataacattttgtgaaggcat |
321 |
Q |
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| T |
6409337 |
tgagctgaatcctattctcatgtcactattaatttgttacttttgtataccaaagttttggtgaatccttcaatgagtacagaacattttgtgaaggcat |
6409238 |
T |
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| Q |
322 |
atatttcatcaaaactacacaaagacttctacttacaccaaagcaatatcaaaccaa--attgagttggatttaaa |
395 |
Q |
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| T |
6409237 |
gtatttcatcaaaactacacaaagacttctacttacaccaaagcaatatcaaaccaatttttgagttggatttaaa |
6409162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 6405765 - 6405846
Alignment:
| Q |
20 |
cttgtgtttaaagttattaggtcattgataga----cactgatttgagaaagttagaataactttatggtggaagggatttg |
97 |
Q |
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| T |
6405765 |
cttgtgtttaaagttattagttcattgatagataggcacagatttggttaagttagaataactttttgatggaagggatttg |
6405846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 6407102 - 6407193
Alignment:
| Q |
154 |
tatgttggatgattccttttgaacttttag-taaaaccgtgtattcaacacaaataatgccccacttgctgagttgaatcctattctcatgtca |
246 |
Q |
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| T |
6407102 |
tatgatggatgattccttttgaactttttgcaaaaaccgtgtattcagcac--accatgctccacttgctgaattgaatcttattctaatgtca |
6407193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 4965885 - 4966022
Alignment:
| Q |
20 |
cttgtgtttaaagttattaggtcattgataga----cactgatttgagaaagttagaataactttatggtggaagggatttgatcaaggttcacttatga |
115 |
Q |
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| T |
4965885 |
cttgtgtttaaggttattagttcattgatagataggcacaaatttggtgaagttagaataactttttggtggaagggatttgatcaaggtttacttatga |
4965984 |
T |
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| Q |
116 |
attatgactcacggtgtaagttgaaaaggaaatgcata |
153 |
Q |
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| T |
4965985 |
gttatgactaacgttgtaagttgaatttgaaatgcata |
4966022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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