View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_18 (Length: 379)
Name: NF3538_low_18
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 21665207 - 21665557
Alignment:
| Q |
11 |
cacagacacttaaaattaattaataaatcttcaacgtttttaatttattgttgtgcaggaaatgtgagttcacccttggaattgactgaggaggaatgga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665207 |
cacagacacttaaaattaattaataaatcttcaacgtttttaatttattgttgtgcaggaaatgtgagttcacccttggaattgactgaggaggaatgga |
21665306 |
T |
|
| Q |
111 |
acaatgtgtttaaaacaaacataacaggtacatggttggtgtcaaaatatgtatgcaaactcatgcgtgattcaaagaggaaaggatcaattatcaatat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665307 |
acaatgtgtttaaaacaaacataacaggtacatggttagtgtcaaaatatgtatgcaaactcatgcgtgattcaaagaggaaaggatcaattatcaatat |
21665406 |
T |
|
| Q |
211 |
ctcttcaattgctggcctagagagggggcaattgcccggtggaactgcatatgcttgttcaaaggcaggcgtcaacatgctcacaaaggtaattaatctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21665407 |
ctcttcaattgctggcctagagagggggcaattgcccggtggaactgcatatgcttgttcaaaggctggcgtcaacatgctcacaaaggtaattaatctt |
21665506 |
T |
|
| Q |
311 |
taattctattttataaattagacaacttattttcacttttatgtttgtatt |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665507 |
taattctattttataaattagacaacttattttcacttttatgtttgtatt |
21665557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 21673971 - 21674321
Alignment:
| Q |
11 |
cacagacacttaaaattaattaataaatcttcaacgtttttaatttattgttgtgcaggaaatgtgagttcacccttggaattgactgaggaggaatgga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21673971 |
cacagacacttaaaattaattaataaatcttcaacgtttttaatttattgttgtgcaggaaatgtgagttcacccttggaattgactgaggaggaatgga |
21674070 |
T |
|
| Q |
111 |
acaatgtgtttaaaacaaacataacaggtacatggttggtgtcaaaatatgtatgcaaactcatgcgtgattcaaagaggaaaggatcaattatcaatat |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674071 |
acaatgtgtttaaaacaaacataacaggtacatggttagtgtcaaaatatgtatgcaaactcatgcgtgattcaaagaggaaaggatcaattatcaatat |
21674170 |
T |
|
| Q |
211 |
ctcttcaattgctggcctagagagggggcaattgcccggtggaactgcatatgcttgttcaaaggcaggcgtcaacatgctcacaaaggtaattaatctt |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21674171 |
ctcttcaattgctggcctagagagggggcaattgcccggtggaactgcatatgcttgttcaaaggctggcgtcaacatgctcacaaaggtaattaatctt |
21674270 |
T |
|
| Q |
311 |
taattctattttataaattagacaacttattttcacttttatgtttgtatt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674271 |
taattctattttataaattagacaacttattttcacttttatgtttgtatt |
21674321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 59 - 361
Target Start/End: Original strand, 21660718 - 21661020
Alignment:
| Q |
59 |
tgttgtgcaggaaatgtgagttcacccttggaattgactgaggaggaatggaacaatgtgtttaaaacaaacataacaggtacatggttggtgtcaaaat |
158 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||| ||||||| |
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| T |
21660718 |
tgttgtgcaggaaatgtgagttcacctttagaattgaccgaggaggaatggaataatgtctttagaacaaacataacaggtgcatggttggtatcaaaat |
21660817 |
T |
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| Q |
159 |
atgtatgcaaactcatgcgtgattcaaagaggaaaggatcaattatcaatatctcttcaattgctggcctagagagggggcaattgcccggtggaactgc |
258 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
21660818 |
atgtatgcaaactgatgcgtgattcaaagaggaaagggtcaattatcaatatttcttcaattgctggcctagaaagggggcaagtgcccggtggaactgc |
21660917 |
T |
|
| Q |
259 |
atatgcttgttcaaaggcaggcgtcaacatgctcacaaaggtaattaatctttaattctattttataaattagacaacttattttcacttttatgtttgt |
358 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
21660918 |
atatgcttgttcaaaggcaggcgtgaacatgctcacaaaggtaattaatctttaaatctaatttataaattagacaaactattttcatttttatgtttgt |
21661017 |
T |
|
| Q |
359 |
att |
361 |
Q |
| |
|
||| |
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|
| T |
21661018 |
att |
21661020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 59 - 361
Target Start/End: Original strand, 21669482 - 21669784
Alignment:
| Q |
59 |
tgttgtgcaggaaatgtgagttcacccttggaattgactgaggaggaatggaacaatgtgtttaaaacaaacataacaggtacatggttggtgtcaaaat |
158 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||| |||| |||||||||||||||| |||||||||| ||||||| |
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| T |
21669482 |
tgttgtgcaggaaatgtgagttcacctttagaattgaccgaggaggaatggaataatgtctttagaacaaacataacaggtgcatggttggtatcaaaat |
21669581 |
T |
|
| Q |
159 |
atgtatgcaaactcatgcgtgattcaaagaggaaaggatcaattatcaatatctcttcaattgctggcctagagagggggcaattgcccggtggaactgc |
258 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
21669582 |
atgtatgcaaactgatgcgtgattcaaagaggaaagggtcaattatcaatatttcttcaattgctggcctagaaagggggcaagtgcccggtggaactgc |
21669681 |
T |
|
| Q |
259 |
atatgcttgttcaaaggcaggcgtcaacatgctcacaaaggtaattaatctttaattctattttataaattagacaacttattttcacttttatgtttgt |
358 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
21669682 |
atatgcttgttcaaaggcaggcgtgaacatgctcacaaaggtaattaatctttaaatctaatttataaattagacaaactattttcatttttatgtttgt |
21669781 |
T |
|
| Q |
359 |
att |
361 |
Q |
| |
|
||| |
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|
| T |
21669782 |
att |
21669784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 19977232 - 19977316
Alignment:
| Q |
86 |
ttggaattgactgaggaggaatggaacaatgtgtttaaaacaaacataacaggtacatggttggtgtcaaaatatgtatgcaaac |
170 |
Q |
| |
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||||| ||| |||| || |||||||| |||| |||||||| ||| |||| ||| | |||||||| |||||||||||||| |||| |
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|
| T |
19977232 |
ttggatttgtctgaagatgaatggaatcatgtttttaaaactaacttaactggttcttggttggtttcaaaatatgtatgtaaac |
19977316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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