View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_19 (Length: 331)
Name: NF3538_low_19
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 35256585 - 35256889
Alignment:
| Q |
9 |
acgttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatgga |
108 |
Q |
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| T |
35256585 |
acgttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatgga |
35256684 |
T |
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| Q |
109 |
tggtgtaggaacatacacgggtattaatggtgagacatataagggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggt |
208 |
Q |
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| T |
35256685 |
tggtgtaggaacatacacgggtattaatggtgagacatataaaggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggt |
35256784 |
T |
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| Q |
209 |
gattggtatgaaggtgattggaggagaggggtgcaagatggaaaagggaggtatgaatggagagatatgagtcattatattggtgaatggaagaatggga |
308 |
Q |
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| T |
35256785 |
gattggtatgaaggtgattggaggagaggggtgcaagatggaaaagggaggtatgaatggagagatatgagtcattatattggtgaatggaagaatggga |
35256884 |
T |
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| Q |
309 |
taatt |
313 |
Q |
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| T |
35256885 |
taatt |
35256889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 19643149 - 19642852
Alignment:
| Q |
11 |
gttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatggatg |
110 |
Q |
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| T |
19643149 |
gttggagaatggttcaaaggaaaaactatgggaaagggaaggttcacttggccttcagggccagcttatgaaggggagttcaagagtggttatatggatg |
19643050 |
T |
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| Q |
111 |
gtgtaggaacatacacgggtattaatggtgagacatataagggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggtga |
210 |
Q |
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| T |
19643049 |
gaataggtgcatacacttctactaatggggatacttataaaggacaatgggtgatgaatttgaaacatggtcatggtgagacgagttattcgaatggaga |
19642950 |
T |
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| Q |
211 |
ttggtatgaaggtgattggaggagaggggtgcaagatggaaaagggaggtatgaatggagagatatgagtcattatattggtgaatggaagaatggga |
308 |
Q |
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| T |
19642949 |
taagtatgagggagaatggagaagaggtttgcaggatggacaagggagatatgagtggaaagatgagaaatattatattggggaatggaggaatggga |
19642852 |
T |
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