View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_21 (Length: 320)
Name: NF3538_low_21
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 165 - 308
Target Start/End: Original strand, 5909243 - 5909386
Alignment:
| Q |
165 |
aatgcaagaaatttgaaagttgttagcccagcttgcaatgtttcttgtttgttaagtaatctaatgacgagtgatagatatgaattaagatgatgagagt |
264 |
Q |
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| T |
5909243 |
aatgcaagaaatttgaaagttgttagcccagcttgcaatgtttcttgtttgttaagtaatctaatgacgagtgatagatatgaattaagatgatgagagt |
5909342 |
T |
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| Q |
265 |
ttagagacgaatgtatgtgttgtaaaactgatctcattagtgat |
308 |
Q |
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| T |
5909343 |
ttagagacgaatgtatgtgttgtaaaactgatctcattagtgat |
5909386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 5909092 - 5909164
Alignment:
| Q |
14 |
aggcttcatgttttgttcttgttttgcttcttacattttgttccattttgtctatccctgtaaaaatcaactc |
86 |
Q |
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| T |
5909092 |
aggcttcatgttttgctcttgttttgcttcttacattttgttccattttgtctatccctgtaaaaatcaactc |
5909164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 5912962 - 5913011
Alignment:
| Q |
14 |
aggcttcatgttttgttcttgttttgcttcttacattttgttccattttg |
63 |
Q |
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| T |
5912962 |
aggcttcatgttttgctcttgttttgcttcttacgttttgttccattttg |
5913011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 35005427 - 35005543
Alignment:
| Q |
193 |
cagcttgcaatgtttcttgtttgttaagtaatctaatgacgagtgatagatatgaattaagatgatgagagtttagagacgaatgtatgtgttgtaaaac |
292 |
Q |
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| T |
35005427 |
cagcttgtaatgtttcttgtttgttaagtaatctaatcatgagtgatagaaatgaattaacttgatgagagtttagataagaatgtaaatgttg-caaac |
35005525 |
T |
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| Q |
293 |
tgatctcattagtgatga |
310 |
Q |
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| T |
35005526 |
tgatctcattagtaatga |
35005543 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 32962741 - 32962654
Alignment:
| Q |
206 |
ttcttgtttgttaagtaatctaatgacgagtgatagatatgaattaagatgatgagagtttagagacgaatgtatgtgttgtaaaact |
293 |
Q |
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| T |
32962741 |
ttcttgtttgttttgtagtctaactatgagtgataaagatgaattaatatgatgggaatttagaggagaatgtatgtgttgtaaaact |
32962654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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