View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3538_low_24 (Length: 301)
Name: NF3538_low_24
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 1021362 - 1021089
Alignment:
| Q |
18 |
agtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtcgagtttagacaccgtacaacccattgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
1021362 |
agtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtcgagtttagacacagtgcaacccattgt |
1021263 |
T |
|
| Q |
118 |
ttcaggtggtatatatataccgta-----------tatttgaacgtgtgtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaaac |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1021262 |
ttcaggtggtatatatataccgtatattatacacgtatttgaacgtctgtatgcgtatattaaacaaaaacaaatgttgaagaaggttttgaagggaaac |
1021163 |
T |
|
| Q |
207 |
-aagaacttgaaaaac-aagtgcaagtgttagttaatctgaagtgctatgatatctaggttggttaggtttattgaaatgatg |
287 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
1021162 |
aaagaacttgaaaaacaaagtgcaagt----gttaatctgaagtgc-----tatctaggttggttaggtttactgaagtgatg |
1021089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University