View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3538_low_26 (Length: 279)
Name: NF3538_low_26
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 35256608 - 35256335
Alignment:
| Q |
1 |
ttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaaattttctgcccattgtcctgtatagtaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35256608 |
ttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaaattttctgcccattgtcctgtatagtaatc |
35256509 |
T |
|
| Q |
101 |
accattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgttatcatcatgatggtggctgccttcttcatcgtctgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35256508 |
accattggaaagaaccttctcttcggtgtatagttcaaatacctggtttccattttcatcgttatcatcatggtggtggctgccttcttcatcgtctgca |
35256409 |
T |
|
| Q |
201 |
tttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcacttgttcatctcac |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35256408 |
tttgtaattgctaatgctccaagaccaaatatactattggcacgttttttagctactgcacttgttcttctcac |
35256335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 19643128 - 19643249
Alignment:
| Q |
1 |
ttcctttgaaccattgtccaacgtacatgcacccatccgtccatagatattttccttctccatgtggaaaattttctgcccattgtcctgtatagtaatc |
100 |
Q |
| |
|
||||||||||||||| |||||| || || || ||||| ||||||| || || |||| |||||||| || || || ||||||| |||| |||||||||| |
|
|
| T |
19643128 |
ttcctttgaaccattctccaacatatatacatccatctgtccataagtacttccctttcccatgtgggaagttatcagcccattctcctttatagtaatc |
19643227 |
T |
|
| Q |
101 |
accattggaaagaaccttctct |
122 |
Q |
| |
|
||||||| |||||| ||||| |
|
|
| T |
19643228 |
tccattgggtagaaccctctct |
19643249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University