View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_27 (Length: 278)
Name: NF3538_low_27
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 46 - 274
Target Start/End: Original strand, 37013033 - 37013270
Alignment:
| Q |
46 |
ataagattaatttcatttgttaagatttgagaatagaagtttgaaatcacttatcaannnnnnnnn-gaaggagccttataagtatgatgacaccc-gtg |
143 |
Q |
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| T |
37013033 |
ataagattactttcatttgttaagatttgagaacagaagtttgaaattacttatcaattttttttttgaaggagccttataagtatgatgacaccccgtg |
37013132 |
T |
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| Q |
144 |
atctatatcttctatatagaatattttgaaaggatcaatgt--------tatatatttgtaaaatataaag--nnnnnnngcaatgataaaaaatggttg |
233 |
Q |
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| T |
37013133 |
atctatatct---atatagaatattttgaaaggatcaatgttatatggatatatatttgtaaaatataaagtttttttttgcaatgataaaaaatggttg |
37013229 |
T |
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| Q |
234 |
caaagaaaatcttatcccatgaacgtggcgctgacatatat |
274 |
Q |
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| T |
37013230 |
caaagaaaatcttatcccatggacgtggcgctgacatatat |
37013270 |
T |
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