View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_28 (Length: 256)
Name: NF3538_low_28
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 35428815 - 35429044
Alignment:
| Q |
12 |
gtgtatatatatatcaaaatttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaata |
111 |
Q |
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|||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35428815 |
gtgtatatatatttcaaaaattaatactttcctgatcgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaata |
35428914 |
T |
|
| Q |
112 |
aatttggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35428915 |
aatttggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaatcatcaccaaaaggcaaa |
35429014 |
T |
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| Q |
212 |
ttacttttctacttctacctcatacttact |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35429015 |
ttacttttctacttctacctcatacttact |
35429044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 35419682 - 35419886
Alignment:
| Q |
12 |
gtgtatatatatatcaaaatttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaata |
111 |
Q |
| |
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|||||||||||| |||| | |||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35419682 |
gtgtatatatatttcaataattaatacttccctgatagaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaata |
35419781 |
T |
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| Q |
112 |
aatttggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaa |
211 |
Q |
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|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||| |
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| T |
35419782 |
aatttggacaaaacattattagggttat-aacctacttaaactcttccaaaattttgcctataaatgcattgtatagcaaaatcatgagcaaaaggcaaa |
35419880 |
T |
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| Q |
212 |
ttactt |
217 |
Q |
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|||||| |
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| T |
35419881 |
ttactt |
35419886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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