View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3538_low_3 (Length: 545)
Name: NF3538_low_3
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 31378231 - 31377799
Alignment:
| Q |
16 |
atgaaagaatgggaacgcaaattgagaaacaaatatcgagactccattgaagagtgtagggaaaagatgggaaggcagagggatagtgtccaaatggcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378231 |
atgaaagaatgggaacgcaaattgagaaacaaatatcgagactccattgaagagtgtagggaaaagatgggaaggcagagggatagtgtccaaatggcac |
31378132 |
T |
|
| Q |
116 |
aaatagaaagatacaaggaatttggtgattgaaagagaaatggagaatgaaacatgtgtgatagatagaactgtaatttaatgctgaatgagagatgtgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31378131 |
aaatagaaagatacaaggaatttggtgattgaaagagaaatggagaatgaaacatgtgtgatagatagaactgtaatttaatgctgaatgagagatgtgg |
31378032 |
T |
|
| Q |
216 |
aaagttctcgagaaaacgtagacggcaaacaattttttaaattgtttcttgttaataggatcggatgaagtatatgnnnnnnnncacaatatatattata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
31378031 |
aaagttctcgagaaaacgtagacggcaaacaattttttaaattgtttcttgttaatagaatcggatgaagtatatgttttttttcacaatatatattata |
31377932 |
T |
|
| Q |
316 |
cactcgtcatgagnnnnnnnnnnnnngatgataacactagtcatgagttgttttagaagtttttaaaactgaaccatccgatttaatataaatacaannn |
415 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31377931 |
cactcgtcatgagttcttatttttttgatgataacactagtcatgagttgttttagaagtttttaaaactgaaccatccgatttaatagaaatacaattt |
31377832 |
T |
|
| Q |
416 |
nnnnaaataaaccaagtcatacggttttatcca |
448 |
Q |
| |
|
||||||||||| |||| || ||||||||| |
|
|
| T |
31377831 |
ttttaaataaaccaaatcatccgattttatcca |
31377799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 444 - 522
Target Start/End: Complemental strand, 31377723 - 31377645
Alignment:
| Q |
444 |
atccatttttaaaatgaattaaataccatgagttagacataataaatttgaattactagacaaaaaccagtacagcggg |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
31377723 |
atccatttttaaaatgaattaaataccatgagttagacataataaatttgaattattagacaaaaaacagtacagcggg |
31377645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 31393734 - 31393609
Alignment:
| Q |
134 |
aatttggtgattgaaagagaaatggagaatgaaaca-tgtgtgatagatagaactgtaatttaatgctgaatgagagatgtggaaagttctcgagaaaac |
232 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||| || |||| |||||||| || |||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
31393734 |
aatttggtgattgaaagaaaaaggaagaatgaaacactgggtgaaagatagaagtgcaattggaagctgaatgagagatgtggaaagttctcgagaaaaa |
31393635 |
T |
|
| Q |
233 |
gtagacggcaaacaattttttaaatt |
258 |
Q |
| |
|
|||| |||||||||||||| ||||| |
|
|
| T |
31393634 |
gtagggggcaaacaatttttgaaatt |
31393609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 30607894 - 30607771
Alignment:
| Q |
134 |
aatttggtgattgaaagagaaatggagaatgaaacatgtgtgatagatagaactgtaatttaatgctgaatgagagatgtggaaagttctcgagaaaacg |
233 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| | |||| ||||| || | |||| || |||||||||||||||||||||||||| ||||||| | |
|
|
| T |
30607894 |
aatttggtgattgaaagagaaaagacgaatgaaacacgggtgaaagataaaagtacaattgaa-gctgaatgagagatgtggaaagttcttgagaaaatg |
30607796 |
T |
|
| Q |
234 |
tagacggcaaacaattttttaaatt |
258 |
Q |
| |
|
|| |||||||||||||| ||||| |
|
|
| T |
30607795 |
caggtggcaaacaatttttcaaatt |
30607771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 41569211 - 41569246
Alignment:
| Q |
253 |
taaattgtttcttgttaataggatcggatgaagtat |
288 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41569211 |
taaattgtttcttgtaaataggatcggatgaagtat |
41569246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 44736811 - 44736775
Alignment:
| Q |
253 |
taaattgtttcttgttaataggatcggatgaagtata |
289 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
44736811 |
taaattgtttcttgtaaataggatcggaggaagtata |
44736775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University