View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3538_low_35 (Length: 244)

Name: NF3538_low_35
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3538_low_35
NF3538_low_35
[»] chr2 (2 HSPs)
chr2 (46-200)||(12204550-12204697)
chr2 (85-121)||(8741051-8741087)
[»] chr3 (1 HSPs)
chr3 (85-125)||(47077655-47077695)
[»] scaffold0074 (1 HSPs)
scaffold0074 (85-125)||(29767-29807)
[»] chr8 (2 HSPs)
chr8 (85-121)||(29912139-29912175)
chr8 (85-121)||(32615836-32615872)
[»] chr1 (1 HSPs)
chr1 (85-125)||(3519579-3519619)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 46 - 200
Target Start/End: Complemental strand, 12204697 - 12204550
Alignment:
Q  46 tatgttttttaatgtttcaatgtgttaaatatacaaaattacacaaattcaaagataaaatttctactttaaactttttactttttaattttaacaagtg 145  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||  ||    
T  12204697 tatgttttttaatgtttcaatgtgttaaatatacaaaattgcacaaattcaaagataaaatttctactttaaactt-------tttaattttaacagatg 12204605  T
Q  146 ccctcaaaatatattaatagcatttagttattttataagtgtcaaactcaagctc 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12204604 cccttaaaatatattaatagcatttagttattttataagtgtcaaactcaagctc 12204550  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 8741051 - 8741087
Alignment:
Q  85 tacacaaattcaaagataaaatttctactttaaactt 121  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  8741051 tacacaaattccaagataaaatttctattttaaactt 8741087  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 47077695 - 47077655
Alignment:
Q  85 tacacaaattcaaagataaaatttctactttaaacttttta 125  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  47077695 tacacaaattcaaaaataaaatttttactttaaacttttta 47077655  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 29767 - 29807
Alignment:
Q  85 tacacaaattcaaagataaaatttctactttaaacttttta 125  Q
    ||||| ||||| ||||||||||||||||||| |||||||||    
T  29767 tacacgaattccaagataaaatttctactttcaacttttta 29807  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 29912175 - 29912139
Alignment:
Q  85 tacacaaattcaaagataaaatttctactttaaactt 121  Q
    ||||||||||  |||||||||||||||||||||||||    
T  29912175 tacacaaattttaagataaaatttctactttaaactt 29912139  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 32615872 - 32615836
Alignment:
Q  85 tacacaaattcaaagataaaatttctactttaaactt 121  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  32615872 tacacgaattccaagataaaatttctactttaaactt 32615836  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 3519579 - 3519619
Alignment:
Q  85 tacacaaattcaaagataaaatttctactttaaacttttta 125  Q
    ||||||||||| ||||||| || ||||||||||||||||||    
T  3519579 tacacaaattcgaagataatatatctactttaaacttttta 3519619  T

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