View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_38 (Length: 238)
Name: NF3538_low_38
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15506382 - 15506605
Alignment:
| Q |
1 |
cgtagttggatttggtgaatccaatttctgtaccataagaaaaataaccattacccttgatgaaaaagttgaaataaaactatgcaacagtagtgttctt |
100 |
Q |
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| T |
15506382 |
cgtagttggatttggtgaatccattttctgtaccataagaaaaataaccattacccttgatgaaaaagttgaaataaaactatgcaacagcagtgttctt |
15506481 |
T |
|
| Q |
101 |
gaatcatgtcagaatttattctattatctttagaacacgaaagtagatgtaacttcaaaataattcagtttggacaaactagttacgattagaggtctaa |
200 |
Q |
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| T |
15506482 |
gaatcatgtcagaatttattctattatctttagaacacgaaagtagatgtaacttcaaaataaatcactttggacaaactagttacgattagaggtctaa |
15506581 |
T |
|
| Q |
201 |
taagagctagacaggttttatttg |
224 |
Q |
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||||||||||||| |||||||||| |
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| T |
15506582 |
taagagctagacaagttttatttg |
15506605 |
T |
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