View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_4 (Length: 540)
Name: NF3538_low_4
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 521
Target Start/End: Complemental strand, 38633272 - 38632759
Alignment:
| Q |
14 |
agagcacttgaatgagatgcttaaggtccaaggtttgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctga |
113 |
Q |
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| T |
38633272 |
agagcacttgaatgagatgcttaaggtccaaggttcgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctga |
38633173 |
T |
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| Q |
114 |
ctcgagagatttaatatgcgcagttgtgcatagaggatatccgattcacnnnnnnnnnn------tacaatcacactcggtacttttcagtttatgttct |
207 |
Q |
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| T |
38633172 |
ctcgagagatttaatatgtgcagttgtgcatagaggatatccgattcacaaaaaaaaaaaaaaaatacaatcacactcggtacttttcagtttatgttct |
38633073 |
T |
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| Q |
208 |
gttactcattttctggttcctttgattttgtttcccactgtactttactttgtaagcaccaggttgccccattttatcacttttattggtttcttcagct |
307 |
Q |
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| T |
38633072 |
gttactcattttctggttcctttgattttgtttcccactgtactttactttgtaagcaccaggttgccccattttatcacttttattggtttcttcagct |
38632973 |
T |
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| Q |
308 |
tctcccttatttatttcaacattgttctttttccatttccttgaatcttacatcataagtctatggaagataccttagggtttttctcatgttcatgatt |
407 |
Q |
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| T |
38632972 |
tctcccttatttatttcaacattgttctttttccatttccttgaatcttacatcataagtctatggaagataccttagggtttttctcatgttcatgatt |
38632873 |
T |
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| Q |
408 |
atgacagccaatatttcaacaaactaaagaggagaacagaatgactaaaaaacctgtggtacttgttcttgttggtcgaatcaagccattactgattact |
507 |
Q |
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| T |
38632872 |
atgacagccaatatttcaacaaactaaagaggagaacagaatgactaaaaaacctgtggtacttgttcttgttggtcgaatcaagccattactgattact |
38632773 |
T |
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| Q |
508 |
ctcaagctgagtac |
521 |
Q |
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| T |
38632772 |
ctcaagctgagtac |
38632759 |
T |
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