View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3538_low_42 (Length: 233)

Name: NF3538_low_42
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3538_low_42
NF3538_low_42
[»] chr6 (2 HSPs)
chr6 (1-221)||(2486156-2486369)
chr6 (159-208)||(32531341-32531390)
[»] chr4 (6 HSPs)
chr4 (1-221)||(27088742-27088955)
chr4 (161-220)||(32006335-32006393)
chr4 (158-221)||(35519282-35519345)
chr4 (158-208)||(1183927-1183977)
chr4 (159-208)||(38740585-38740634)
chr4 (181-209)||(51610328-51610356)
[»] chr8 (9 HSPs)
chr8 (158-221)||(13469374-13469437)
chr8 (158-221)||(13150157-13150220)
chr8 (159-208)||(1372815-1372864)
chr8 (154-206)||(10864991-10865043)
chr8 (157-220)||(16326872-16326935)
chr8 (159-208)||(1759441-1759490)
chr8 (159-205)||(15898993-15899039)
chr8 (159-205)||(30800403-30800449)
chr8 (159-208)||(9503206-9503255)
[»] chr3 (9 HSPs)
chr3 (159-208)||(35379588-35379637)
chr3 (158-208)||(5530835-5530885)
chr3 (159-208)||(31766460-31766509)
chr3 (165-221)||(42857372-42857428)
chr3 (159-208)||(14266015-14266064)
chr3 (158-215)||(14771074-14771130)
chr3 (159-208)||(54768166-54768215)
chr3 (160-208)||(21091777-21091825)
chr3 (163-215)||(46530468-46530520)
[»] chr1 (6 HSPs)
chr1 (158-221)||(44648445-44648508)
chr1 (159-221)||(38619431-38619493)
chr1 (159-221)||(1580999-1581061)
chr1 (183-221)||(4242277-4242315)
chr1 (158-208)||(38544073-38544123)
chr1 (176-220)||(31845313-31845357)
[»] chr2 (4 HSPs)
chr2 (159-208)||(13450376-13450425)
chr2 (163-204)||(20718259-20718300)
chr2 (159-208)||(21885130-21885179)
chr2 (177-221)||(3357172-3357216)
[»] scaffold0003 (1 HSPs)
scaffold0003 (159-215)||(227477-227533)
[»] chr5 (7 HSPs)
chr5 (177-221)||(19930473-19930517)
chr5 (174-221)||(23270864-23270911)
chr5 (161-208)||(28766513-28766560)
chr5 (159-221)||(3295817-3295878)
chr5 (177-215)||(16610544-16610582)
chr5 (159-221)||(33629568-33629630)
chr5 (183-215)||(8942630-8942662)
[»] scaffold0268 (1 HSPs)
scaffold0268 (158-221)||(21419-21482)
[»] chr7 (8 HSPs)
chr7 (158-221)||(15566577-15566640)
chr7 (159-221)||(21080021-21080083)
chr7 (159-208)||(3996598-3996647)
chr7 (159-208)||(5800472-5800521)
chr7 (159-204)||(9060154-9060199)
chr7 (159-208)||(21635070-21635119)
chr7 (159-208)||(34729408-34729457)
chr7 (193-221)||(12170739-12170767)
[»] scaffold1613 (1 HSPs)
scaffold1613 (158-208)||(352-402)
[»] scaffold0293 (1 HSPs)
scaffold0293 (159-209)||(4705-4755)
[»] scaffold0097 (1 HSPs)
scaffold0097 (163-204)||(22096-22137)
[»] scaffold0014 (1 HSPs)
scaffold0014 (158-215)||(21086-21143)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2486369 - 2486156
Alignment:
Q  1 tgtggctatgtgagcatttctaattcaaaagcaacaaatacgtacataaataatttttgttgtgttgtgtttaatggtatatcaatattattccatctcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2486369 tgtggctatgtgagcatttctaattcaaaagcaacaaatac----ataaataatttttgttgtgttgtgtttaatggtatatcaatattattccatctcg 2486274  T
Q  101 ttataaagatttagcatatatcttcctttatagtgtaaaaattgttcctcttttttgaactagcgaaaagatcggtac-tcaagtgtccgtctttccgct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  || ||| ||    |||||| ||||    
T  2486273 ttataaagatttagcatatatcttcctttatagtgtaaaaattgttcctcttttttgaactagcgaaaagacggacacttcacgt----gtcttttcgct 2486178  T
Q  200 ctttttattatgttaaagtttg 221  Q
    ||||||||||||||||||||||    
T  2486177 ctttttattatgttaaagtttg 2486156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 32531390 - 32531341
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||| || |||||||  | |||||||||||||||||||||    
T  32531390 actagcgaaaagatgggaactcaagcattcgtctttccgctctttttatt 32531341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27088955 - 27088742
Alignment:
Q  1 tgtggctatgtgagcatttctaattcaaaagcaacaaatacgtacataaataatttttgttgtgttgtgtttaatggtatatcaatattattccatctcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27088955 tgtggctatgtgagcatttctaattcaaaagcaacaaatac----ataaataatttttgttgtgttgtgtttaatggtatatcaatattattccatctcg 27088860  T
Q  101 ttataaagatttagcatatatcttcctttatagtgtaaaaattgttcctcttttttgaactagcgaaaagatcggtac-tcaagtgtccgtctttccgct 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  || ||| ||    |||||| ||||    
T  27088859 ttataaagatttagcatatatcttcctttatagtgtaaaaattgttcctcttttttgaactagcgaaaagacggacacttcacgt----gtcttttcgct 27088764  T
Q  200 ctttttattatgttaaagtttg 221  Q
    ||||||||||||||||||||||    
T  27088763 ctttttattatgttaaagtttg 27088742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 32006335 - 32006393
Alignment:
Q  161 tagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagttt 220  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||  ||||||||||    
T  32006335 tagcgaaaaga-cggtactcatgtgtccgtctttccactctttttattgggttaaagttt 32006393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 35519345 - 35519282
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    ||||||||||||||  || |||||  ||||||||||||||||||||||||| |||||| |||||    
T  35519345 aactagcgaaaagacgggcactcacatgtccgtctttccgctctttttattgtgttaacgtttg 35519282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 1183927 - 1183977
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    ||||||||||||||| || ||||| |||  |||||||||||||||||||||    
T  1183927 aactagcgaaaagataggcactcacgtgctcgtctttccgctctttttatt 1183977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 38740585 - 38740634
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||  | |||||||| ||||||||||||| ||||||||||||    
T  38740585 actagcgaaaaattgggtactcatgtgtccgtctttcggctctttttatt 38740634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 51610356 - 51610328
Alignment:
Q  181 aagtgtccgtctttccgctctttttatta 209  Q
    |||||||||||||||||||||||||||||    
T  51610356 aagtgtccgtctttccgctctttttatta 51610328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 13469437 - 13469374
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||| |||||||||  || ||||| ||| |||||||||||||||||||||||||||||||||||    
T  13469437 aacttgcgaaaagacgggcactcacgtgcccgtctttccgctctttttattatgttaaagtttg 13469374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 13150220 - 13150157
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||| |||||||| | |||||| ||||||||||||||||||||||||||  ||||| |||||    
T  13150220 aactagtgaaaagatggatactcacgtgtccgtctttccgctctttttattgcgttaacgtttg 13150157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 1372864 - 1372815
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  1372864 actagcgaaaagttgggtactcacgtgtccgtctttcggctctttttatt 1372815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 10864991 - 10865043
Alignment:
Q  154 tttgaactagcgaaaagatcggtactcaagtgtccgtctttccgctcttttta 206  Q
    |||| ||||||||||||| ||| ||||| ||| ||||||||||||||||||||    
T  10864991 tttggactagcgaaaagaccggcactcatgtgcccgtctttccgctcttttta 10865043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 16326935 - 16326872
Alignment:
Q  157 gaactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagttt 220  Q
    |||||||||||||||| ||  |||| ||| ||||||||| |||||||||||| || ||||||||    
T  16326935 gaactagcgaaaagatgggcgctcacgtgcccgtctttctgctctttttattgtgataaagttt 16326872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 1759441 - 1759490
Alignment:
Q  159 actagcgaaaagatcggt-actcaagtgtccgtctttccgctctttttatt 208  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  1759441 actagcgaaaaga-cggtcactcaagtgtccgtctctccgctctttttatt 1759490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 15899039 - 15898993
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctcttttt 205  Q
    |||||||||||||  || ||||| |||||||||||||||||||||||    
T  15899039 actagcgaaaagacgggcactcacgtgtccgtctttccgctcttttt 15898993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 30800403 - 30800449
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctcttttt 205  Q
    |||||||||||||| || ||||| ||||||||||||| |||||||||    
T  30800403 actagcgaaaagatagggactcacgtgtccgtctttctgctcttttt 30800449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 9503255 - 9503206
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||  || |||| ||||||||||||||| |||||||||||    
T  9503255 actagcgaaaagacgggcactcgagtgtccgtctttcctctctttttatt 9503206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 35379637 - 35379588
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||| ||||| || ||||||||||||||||||||||||||    
T  35379637 actagcgaaaagatgggtacccacgtgtccgtctttccgctctttttatt 35379588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 5530885 - 5530835
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||||||| ||||| ||| ||||||||| ||||||||||||    
T  5530885 aactagcgaaaagatcggcactcacgtgcccgtctttctgctctttttatt 5530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 31766460 - 31766509
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  31766460 actagcgaaaagttgggtactcacgtgtccgtctttcggctctttttatt 31766509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 42857372 - 42857428
Alignment:
Q  165 gaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||  |||||||| ||| || ||||| ||||||||||||||||||||||||||    
T  42857372 gaaaagacgggtactcacgtgcccatcttttcgctctttttattatgttaaagtttg 42857428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 14266064 - 14266015
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||| ||||||  || ||||| ||||||||||||||||||||||||||    
T  14266064 actagcaaaaagaagggcactcacgtgtccgtctttccgctctttttatt 14266015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 14771074 - 14771130
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaa 215  Q
    |||||||||||||| ||| ||||| ||  |||||||||||||||||||||| ||||||    
T  14771074 aactagcgaaaaga-cggcactcacgtacccgtctttccgctctttttattgtgttaa 14771130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 54768215 - 54768166
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||| || ||||| ||||| |||||| |||||||||||||    
T  54768215 actagcgaaaagatgggcactcacgtgtctgtcttttcgctctttttatt 54768166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 21091777 - 21091825
Alignment:
Q  160 ctagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    ||||||||||||| |  ||||| |||||||||||||| |||||||||||    
T  21091777 ctagcgaaaagatggacactcacgtgtccgtctttcctctctttttatt 21091825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 46530520 - 46530468
Alignment:
Q  163 gcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaa 215  Q
    |||||||||| || ||||| ||| || |||||||||||||||||||| |||||    
T  46530520 gcgaaaagattggcactcatgtgcccatctttccgctctttttattacgttaa 46530468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 44648508 - 44648445
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    ||||||||||||||| || |||||  ||||||||||||||||||||||||| || ||| |||||    
T  44648508 aactagcgaaaagataggcactcacatgtccgtctttccgctctttttattgtgctaacgtttg 44648445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 38619431 - 38619493
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||||||||| || | ||| ||||||||||||||||||||||||||  ||||| |||||    
T  38619431 actagcgaaaagatgggcattcacgtgtccgtctttccgctctttttattgcgttaaggtttg 38619493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 1580999 - 1581061
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||||||||  |  ||||| ||||||||||||||||||||||||||  | |||||||||    
T  1580999 actagcgaaaagacggacactcaggtgtccgtctttccgctctttttattgcgctaaagtttg 1581061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 4242315 - 4242277
Alignment:
Q  183 gtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  4242315 gtgtccgtctttccgctctttttattatgctaacgtttg 4242277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 38544073 - 38544123
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    ||||||| ||||||  || ||||||||||||||||||||| ||||||||||    
T  38544073 aactagcaaaaagaggggcactcaagtgtccgtctttccgatctttttatt 38544123  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 31845357 - 31845313
Alignment:
Q  176 tactcaagtgtccgtctttccgctctttttattatgttaaagttt 220  Q
    |||||| ||| |||| |||||| ||||||||||||||||||||||    
T  31845357 tactcacgtgcccgtttttccgatctttttattatgttaaagttt 31845313  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 13450425 - 13450376
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||  |||||||| ||| ||||||||||||||||||||||    
T  13450425 actagcgaaaagacgggtactcacgtgcccgtctttccgctctttttatt 13450376  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 20718300 - 20718259
Alignment:
Q  163 gcgaaaagatcggtactcaagtgtccgtctttccgctctttt 204  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||    
T  20718300 gcgaaaagatcggcactcacgtgcccgtctttccgctctttt 20718259  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 21885130 - 21885179
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||| || ||||| ||| ||||||||| ||||||||||||    
T  21885130 actagcgaaaagatgggcactcacgtgcccgtctttctgctctttttatt 21885179  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 3357172 - 3357216
Alignment:
Q  177 actcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    ||||| ||| ||||||||| | |||||||||||||||||||||||    
T  3357172 actcatgtgcccgtctttctgttctttttattatgttaaagtttg 3357216  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 227533 - 227477
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaa 215  Q
    |||||||||||||   | ||||| |||||||||||||||||||||||||| ||||||    
T  227533 actagcgaaaagacgagcactcacgtgtccgtctttccgctctttttattgtgttaa 227477  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 19930517 - 19930473
Alignment:
Q  177 actcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    ||||| |||||| |||||||||||||||||||||||||| |||||    
T  19930517 actcacgtgtccatctttccgctctttttattatgttaacgtttg 19930473  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 23270911 - 23270864
Alignment:
Q  174 ggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||| ||| ||||||||||||||||||||||  |||||||||||    
T  23270911 ggtactcacgtgcccgtctttccgctctttttattgcgttaaagtttg 23270864  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 28766560 - 28766513
Alignment:
Q  161 tagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||| || ||||| ||| ||||||||||||||||||||||    
T  28766560 tagcgaaaagatgggcactcatgtgcccgtctttccgctctttttatt 28766513  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 3295878 - 3295817
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||||||||  |||||||| ||||| |||||||||||||||||||| || ||| |||||    
T  3295878 actagcgaaaagacgggtactcacgtgtc-gtctttccgctctttttattgtgctaacgtttg 3295817  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 16610544 - 16610582
Alignment:
Q  177 actcaagtgtccgtctttccgctctttttattatgttaa 215  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  16610544 actcacgtgtccgtctttccgctctttttattacgttaa 16610582  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 33629630 - 33629568
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||| ||||||  || |||||||||||||||||||| |||||||||||  ||||| |||||    
T  33629630 actagcaaaaagaagggcactcaagtgtccgtctttccactctttttattgcgttaatgtttg 33629568  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 8942630 - 8942662
Alignment:
Q  183 gtgtccgtctttccgctctttttattatgttaa 215  Q
    ||||||||||||||||||||||||||| |||||    
T  8942630 gtgtccgtctttccgctctttttattacgttaa 8942662  T

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Target: scaffold0268 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 21482 - 21419
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    ||||||| ||||||| || ||||  ||||||||||||||||||||||||||  | |||||||||    
T  21482 aactagcaaaaagatgggcactcgcgtgtccgtctttccgctctttttattgcgctaaagtttg 21419  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 15566577 - 15566640
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||||||||   || ||||| ||| | |||||||||||| ||||||||||||||||||||    
T  15566577 aactagcgaaaagtcgggcactcacgtgcctgtctttccgctcattttattatgttaaagtttg 15566640  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 21080021 - 21080083
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaaagtttg 221  Q
    |||||||||||||| || ||| | |||||||||||||  |||||||||||| | |||||||||    
T  21080021 actagcgaaaagatgggcacttacgtgtccgtctttctactctttttattacgctaaagtttg 21080083  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 3996598 - 3996647
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||   | ||||| ||||||||||||||||||||||||||    
T  3996598 actagcgaaaagacgagcactcacgtgtccgtctttccgctctttttatt 3996647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 5800521 - 5800472
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||  |  ||||| ||||||||||||||||||||||||||    
T  5800521 actagcgaaaagacggacactcacgtgtccgtctttccgctctttttatt 5800472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 9060199 - 9060154
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttt 204  Q
    ||||| |||||||  |||||||||||| ||||||||||||||||||    
T  9060199 actagtgaaaagacgggtactcaagtgcccgtctttccgctctttt 9060154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 21635119 - 21635070
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||| || ||||| |||  |||||||||||||||||||||    
T  21635119 actagcgaaaagattggcactcatgtgctcgtctttccgctctttttatt 21635070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 34729457 - 34729408
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    |||||||||||||  || ||||| |||||||||||||||| |||||||||    
T  34729457 actagcgaaaagacgggcactcacgtgtccgtctttccgcactttttatt 34729408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 12170767 - 12170739
Alignment:
Q  193 ttccgctctttttattatgttaaagtttg 221  Q
    |||||||||||||||||||||||||||||    
T  12170767 ttccgctctttttattatgttaaagtttg 12170739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 352 - 402
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatt 208  Q
    ||||||| ||||||  || ||||||||||||||||||||| ||||||||||    
T  352 aactagcaaaaagaggggcactcaagtgtccgtctttccgatctttttatt 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 4755 - 4705
Alignment:
Q  159 actagcgaaaagatcggtactcaagtgtccgtctttccgctctttttatta 209  Q
    ||||||| |||||  || ||||| |||||||||||||||||||||||||||    
T  4755 actagcgcaaagacaggcactcacgtgtccgtctttccgctctttttatta 4705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 22137 - 22096
Alignment:
Q  163 gcgaaaagatcggtactcaagtgtccgtctttccgctctttt 204  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||    
T  22137 gcgaaaagatcggcactcacgtgcccgtctttccgctctttt 22096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 21086 - 21143
Alignment:
Q  158 aactagcgaaaagatcggtactcaagtgtccgtctttccgctctttttattatgttaa 215  Q
    ||||||||||||||  || |||||  || |||||||||||||||||||||| ||||||    
T  21086 aactagcgaaaagacgggcactcacatgcccgtctttccgctctttttattgtgttaa 21143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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