View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3538_low_44 (Length: 223)

Name: NF3538_low_44
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3538_low_44
NF3538_low_44
[»] chr6 (3 HSPs)
chr6 (1-204)||(9457541-9457744)
chr6 (54-200)||(2355180-2355327)
chr6 (59-200)||(32858624-32858766)
[»] chr8 (3 HSPs)
chr8 (49-200)||(26936587-26936739)
chr8 (54-200)||(30155599-30155746)
chr8 (59-200)||(32793559-32793701)
[»] chr3 (7 HSPs)
chr3 (51-204)||(8240189-8240343)
chr3 (52-200)||(39151189-39151338)
chr3 (72-200)||(46107202-46107331)
chr3 (54-200)||(2552559-2552706)
chr3 (52-205)||(39258708-39258862)
chr3 (109-200)||(9737234-9737326)
chr3 (54-200)||(4087555-4087702)
[»] chr5 (9 HSPs)
chr5 (51-200)||(6218203-6218353)
chr5 (54-200)||(11493648-11493795)
chr5 (54-200)||(22965209-22965356)
chr5 (54-200)||(1588468-1588615)
chr5 (54-200)||(32099966-32100113)
chr5 (54-200)||(9476809-9476956)
chr5 (59-200)||(18253616-18253758)
chr5 (59-148)||(36864327-36864416)
chr5 (156-200)||(17077986-17078030)
[»] chr1 (6 HSPs)
chr1 (51-200)||(42927355-42927505)
chr1 (52-200)||(6469577-6469726)
chr1 (54-200)||(25990094-25990241)
chr1 (54-200)||(15731457-15731604)
chr1 (52-200)||(50650384-50650533)
chr1 (54-200)||(23435251-23435398)
[»] chr2 (2 HSPs)
chr2 (59-200)||(36371012-36371154)
chr2 (109-200)||(10254892-10254984)
[»] chr7 (3 HSPs)
chr7 (54-200)||(41851573-41851720)
chr7 (54-200)||(42883014-42883161)
chr7 (113-200)||(37549932-37550020)
[»] chr4 (2 HSPs)
chr4 (54-200)||(8436454-8436601)
chr4 (54-200)||(732347-732494)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 9457744 - 9457541
Alignment:
Q  1 caaaaaatgtctctctttaaaacgatcagaagttacaacccgattgaatcataagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||    
T  9457744 caaaaaatgtctctctttaaaatgatcagaagttacaacccgattgaatcataagggggcgtttatttggcggttgaaaatttcattcatgggaataacc 9457645  T
Q  101 tttcctttgaaataataataggcatcttattcctaggtatttttaaaacattacgttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9457644 tttcctttgaaataataataggcatcttattcctaggtatttttaaaacattacgttggtaaataattgtgagattcatgaaaattatttgtgatagtgg 9457545  T
Q  201 atat 204  Q
    ||||    
T  9457544 atat 9457541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 2355180 - 2355327
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |||     
T  2355180 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaattg 2355279  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  2355280 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 2355327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 32858624 - 32858766
Alignment:
Q  59 gcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacattacg-tt 157  Q
    |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |||  | ||    
T  32858624 gcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaattgtgttt 32858723  T
Q  158 ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||||||||| |||||||||| |||| |||||||||||||    
T  32858724 ggtaaataattgtcagattcatgggaattgtttgtgatagtgg 32858766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 200
Target Start/End: Complemental strand, 26936739 - 26936587
Alignment:
Q  49 tcataagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaa 148  Q
    ||||| |||||||||| ||||  |||| ||||||||||||||| || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| ||    
T  26936739 tcatatgggtgcgtttgtttgacggtttaaaatttcattcatgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaa 26936640  T
Q  149 cattacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     |||  | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  26936639 aattgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 26936587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 30155746 - 30155599
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||  || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || ||      
T  30155746 agggggcgtttgtttgacggtttaaaatttcatttctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaatgg 30155647  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  30155646 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 30155599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 32793559 - 32793701
Alignment:
Q  59 gcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatt-tttaaaacattacgtt 157  Q
    |||||| ||||  |||||||||||||| ||||| ||| ||||||||||   ||| ||| || |||||||||||| | |||||| |||||||  |    ||    
T  32793559 gcgtttgtttgaaggttgaaaatttcactcatgggaaaaacctttcctcgaaaacaatgatgggcatcttattcttgggtattctttaaaatttggattt 32793658  T
Q  158 ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  32793659 ggtaaataattgtcagattcatgggaattatttgtgatagtgg 32793701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 8240343 - 8240189
Alignment:
Q  51 ataagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaaca 150  Q
    ||||||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |    
T  8240343 ataagggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaa 8240244  T
Q  151 ttacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtggatat 204  Q
    ||  | ||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  8240243 ttgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtggatat 8240189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 39151338 - 39151189
Alignment:
Q  52 taagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacat 151  Q
    |||||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || ||    
T  39151338 taagggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaat 39151239  T
Q  152 tacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    |  | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  39151238 tgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 39151189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 46107331 - 46107202
Alignment:
Q  72 ggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacattacg-ttggtaaataattgt 170  Q
    |||| |||||||||||| || || |||||||||||  ||||||||||| || |||||||||||  ||||||||| || |||  | |||||||||||||||    
T  46107331 ggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggtatcttattcctgagtatttttagaaaattgtgtttggtaaataattgt 46107232  T
Q  171 gagattcatggaaattatttgtgatagtgg 200  Q
     |||||||||| |||| |||||||||||||    
T  46107231 cagattcatgggaattgtttgtgatagtgg 46107202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 2552559 - 2552706
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||| |||||||  ||||||||||| ||||||||||||||  ||||||||| || ||      
T  2552559 agggggcgtttgtttgacggtttaaaatttcattcctgggattaatctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaatgg 2552658  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  2552659 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 2552706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 39258708 - 39258862
Alignment:
Q  52 taagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacat 151  Q
    |||||| |||||| ||||  |||| |||||||||||  || || ||| |||||||  ||||||||||| ||||||||||||||  ||||||||| || ||    
T  39258708 taagggggcgtttgtttgacggtttaaaatttcatttctgggattaatctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaat 39258807  T
Q  152 tacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtggatatt 205  Q
       | ||||||||||||||| |||||||||| |||| ||||||||||||| ||||    
T  39258808 ggtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgggtatt 39258862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 9737326 - 9737234
Alignment:
Q  109 gaaataataataggcatcttattcctaggtatttttaaaacattacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    |||||||||||||||||||||||||| ||||||||||||| | || | || |||||||||||| ||||| ||||  |||||||||||||||||    
T  9737326 gaaataataataggcatcttattcctgggtatttttaaaaaaatatgttttgtaaataattgtcagatttatgggcattatttgtgatagtgg 9737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 4087555 - 4087702
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||| |||||||  ||| ||||||| ||||||||||||||  ||||||||| || ||      
T  4087555 agggggcgtttgtttgacggtttaaaatttcattcctgggattaatctttcctgggaattaataatgggcatcttattcctgagtatttttagaaaatgg 4087654  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  4087655 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 4087702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 6218203 - 6218353
Alignment:
Q  51 ataagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaaca 150  Q
    ||||||| |||||| ||||  |||| |||||||||||| || || |||||||||||   |||||||||| ||||||||||||||  |||||||||||| |    
T  6218203 ataagggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctggaaaataataatgggcatcttattcctgagtatttttaaaaaa 6218302  T
Q  151 ttacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||  | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  6218303 ttgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 6218353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 11493795 - 11493648
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |||     
T  11493795 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaattg 11493696  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  11493695 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 11493648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 22965209 - 22965356
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |||     
T  22965209 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaattg 22965308  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  22965309 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 22965356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 1588468 - 1588615
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || ||      
T  1588468 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaatgg 1588567  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  1588568 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 1588615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 32099966 - 32100113
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||   |||||||||| ||||||||||||||  ||||||||| || |||     
T  32099966 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctggaaaataataatgggcatcttattcctgagtatttttagaaaattg 32100065  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  32100066 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 32100113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 9476809 - 9476956
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||| |||||||  ||||||||||| ||||||||||||||  ||||||||| || ||      
T  9476809 agggggcgtttgtttgacggtttaaaatttcattcctgggattaatctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaatgg 9476908  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  9476909 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 9476956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 18253616 - 18253758
Alignment:
Q  59 gcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacattacgtt- 157  Q
    |||||| ||||  |||| |||||||||||| || || ||| |||| ||  ||||||||||| ||||||||||||||  ||||||| | || |||  |||     
T  18253616 gcgtttgtttgacggtttaaaatttcattcctgggattaatcttttctgggaaataataatgggcatcttattcctgagtattttcagaaaattgtgttt 18253715  T
Q  158 ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||||||||| |||||||||| |||| |||||||||||||    
T  18253716 ggtaaataattgtcagattcatgggaattgtttgtgatagtgg 18253758  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 36864327 - 36864416
Alignment:
Q  59 gcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaa 148  Q
    |||||| ||||  ||||||||||||||||  || |||||| ||||| |   ||||||||||| | |||||||||||||||||||||||||    
T  36864327 gcgtttgtttgacggttgaaaatttcatttttgggaataatctttcttgaaaaataataatatgaatcttattcctaggtatttttaaaa 36864416  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 17078030 - 17077986
Alignment:
Q  156 ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||    
T  17078030 ttggtaaataattgtcagattcatggcaattatttttgatagtgg 17077986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 42927355 - 42927505
Alignment:
Q  51 ataagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaaca 150  Q
    ||||||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |    
T  42927355 ataagggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaa 42927454  T
Q  151 ttacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||  | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  42927455 ttgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 42927505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 200
Target Start/End: Original strand, 6469577 - 6469726
Alignment:
Q  52 taagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacat 151  Q
    |||||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| || |||||||||||  ||||||||| || ||    
T  6469577 taagggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggtatcttattcctgagtatttttagaaaat 6469676  T
Q  152 tacg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    |  | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  6469677 tgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 6469726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 25990241 - 25990094
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||||||||| |  ||||||||||| ||||||||||||||  ||||||||| || |||     
T  25990241 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcttgggaaataataatgggcatcttattcctgagtatttttagaaaattg 25990142  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  25990141 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 25990094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 15731457 - 15731604
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||| |||||||  ||| ||||||| ||||||||||||||  ||||||||| || ||      
T  15731457 agggggcgtttgtttgacggtttaaaatttcattcctgggattaatctttcctgggaattaataatgggcatcttattcctgagtatttttagaaaatgg 15731556  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  15731557 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 15731604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 50650533 - 50650384
Alignment:
Q  52 taagggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacat 151  Q
    |||||| |||||| ||||  |||| |||||||||||| || || ||| ||||| |  ||| ||||||| ||||||||||||||  ||||||||| || |     
T  50650533 taagggggcgtttgtttgacggtttaaaatttcattcctgggattaatctttcttgggaattaataatgggcatcttattcctgagtatttttagaaaac 50650434  T
Q  152 tacgtt-ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
       ||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  50650433 ggtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 50650384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 23435251 - 23435398
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||| |||| ||  ||| ||||||| ||||||||||| ||  ||||||||| || ||      
T  23435251 agggggcgtttgtttgacggtttaaaatttcattcctgggattaatcttttctgggaattaataatgggcatcttatttctgagtatttttagaaaatgg 23435350  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  23435351 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 23435398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 36371012 - 36371154
Alignment:
Q  59 gcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacattacg-tt 157  Q
    |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |||  | ||    
T  36371012 gcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaattgtgttt 36371111  T
Q  158 ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||||||||| |||||||||| |||| |||||||||||||    
T  36371112 ggtaaataattgtcagattcatgggaattgtttgtgatagtgg 36371154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 10254984 - 10254892
Alignment:
Q  109 gaaataataataggcatcttattcctaggtatttttaaaacattacgtt-ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||||||| ||||||||||||||  ||||||||| || |||  ||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  10254984 gaaataataatgggcatcttattcctgagtatttttagaaaattgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 10254892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 41851720 - 41851573
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || |||     
T  41851720 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaattg 41851621  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||| ||||||||||| |||||||||| |||| |||||||||||||    
T  41851620 tgtttgataaataattgtcagattcatgggaattgtttgtgatagtgg 41851573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 42883014 - 42883161
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| || |||||||||||  ||||||||| || |||     
T  42883014 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggtatcttattcctgagtatttttagaaaattg 42883113  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  42883114 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 42883161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 37550020 - 37549932
Alignment:
Q  113 taataataggcatcttattcctaggtatttttaaaacattacgtt-ggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
    ||||||| ||||||||||||||  ||||||||| || |||  ||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  37550020 taataatgggcatcttattcctgagtatttttagaaaattgtgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 37549932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 8436601 - 8436454
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || |||||||||||  ||||||||||| ||||||||||||||  ||||||||| || ||      
T  8436601 agggggcgtttgtttgacggtttaaaatttcattcctgggattaacctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaatgg 8436502  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||| |||| |||||||||||||    
T  8436501 tgtttggtaaataattgtcagattcatgggaattgtttgtgatagtgg 8436454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 732494 - 732347
Alignment:
Q  54 agggtgcgtttatttggtggttgaaaatttcattcatgtgaataacctttcctttgaaataataataggcatcttattcctaggtatttttaaaacatta 153  Q
    |||| |||||| ||||  |||| |||||||||||| || || ||| |||||||  ||||||||||| ||||||||||||||  ||||||||| || ||      
T  732494 agggggcgtttgtttgacggtttaaaatttcattcctgggattaatctttcctgggaaataataatgggcatcttattcctgagtatttttagaaaatgg 732395  T
Q  154 cg-ttggtaaataattgtgagattcatggaaattatttgtgatagtgg 200  Q
     | ||||||||||||||| |||||||||  |||| |||||||||||||    
T  732394 tgtttggtaaataattgtcagattcatgagaattgtttgtgatagtgg 732347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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