View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_46 (Length: 218)
Name: NF3538_low_46
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 51858414 - 51858215
Alignment:
| Q |
2 |
aacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaactc |
101 |
Q |
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| T |
51858414 |
aacactactttataaacaccattaaggggctcaaatgcaattaaaccacgcccatatctagaaaaactgagagtatgtgcttgaaacatttccttaactc |
51858315 |
T |
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| Q |
102 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttgg |
201 |
Q |
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| T |
51858314 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttgg |
51858215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 34865075 - 34865268
Alignment:
| Q |
2 |
aacactactttataaacaccattaaggggctcaaatgaaattaaaccacgcccatatctagaaaaactgagtgtatgtgcttgaaacatttccttaactc |
101 |
Q |
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|||||||||||||||||| || |||||||||||||| ||||||| ||| |||| |||||||||| ||| |||| ||||||||||| |||| |||||| |
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| T |
34865075 |
aacactactttataaacatcagaaaggggctcaaatgcaattaaatcacctccatctctagaaaaattgatagtatatgcttgaaacaattccataactc |
34865174 |
T |
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| Q |
102 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcga |
195 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||| || ||| ||||||| | || |||||||||||||||||||| ||||||||| |
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| T |
34865175 |
gtaagttcatgaaatctaacacattagacgggaaagtgtgtgacatatgagtgttagttacaacatctaagtgacgaagtttgccagatttcga |
34865268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 34145460 - 34145347
Alignment:
| Q |
79 |
tgcttgaaacatttccttaactcgtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgat-tgttagtcaaaatatctaagtgacg |
177 |
Q |
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||||||||||| ||| | ||||| |||||||||||||||||||| || ||||| ||||||||| ||| ||| |||||||||| | |||||||||||| |
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| T |
34145460 |
tgcttgaaacaattctcttactcgcaagttcatgaaatctaacacgttgaatgggtatgtgtgtgttatg-gatgtgttagtcaagacatctaagtgacg |
34145362 |
T |
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| Q |
178 |
aagtttgctagattt |
192 |
Q |
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|| ||| | |||||| |
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| T |
34145361 |
aaattttccagattt |
34145347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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