View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_47 (Length: 217)
Name: NF3538_low_47
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_47 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 6943486 - 6943698
Alignment:
| Q |
5 |
gagatggtaaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatg |
104 |
Q |
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| T |
6943486 |
gagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatcttggaatg |
6943585 |
T |
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| Q |
105 |
ttcttgttcagagccctccctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaatgaaaaacaaaattatgtaaccct |
204 |
Q |
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| T |
6943586 |
ttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaataaaaaacaaaattatgtaaccct |
6943685 |
T |
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| Q |
205 |
tctctcatgtgac |
217 |
Q |
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| T |
6943686 |
tctctcatgtgac |
6943698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 7488548 - 7488348
Alignment:
| Q |
14 |
aatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttc |
113 |
Q |
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| T |
7488548 |
aatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactc |
7488449 |
T |
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| Q |
114 |
agagccctccctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaatgaaaaacaaaattatgtaacccttctctcatg |
213 |
Q |
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| T |
7488448 |
agaaccccacctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatg |
7488349 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
7488348 |
t |
7488348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 7873147 - 7873256
Alignment:
| Q |
24 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctcc |
123 |
Q |
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| T |
7873147 |
tagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaacctac |
7873246 |
T |
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| Q |
124 |
ctttctgaaa |
133 |
Q |
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| T |
7873247 |
ctttatgaaa |
7873256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 7475674 - 7475565
Alignment:
| Q |
24 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcgtttcagatgtgttcaacgatcttggaatgttcttgttcagagccctcc |
123 |
Q |
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| T |
7475674 |
tagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttcttggaatgatcttattcagacccccac |
7475575 |
T |
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| Q |
124 |
ctttctgaaa |
133 |
Q |
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| T |
7475574 |
ctttctgaaa |
7475565 |
T |
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