View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_6 (Length: 519)
Name: NF3538_low_6
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 7 - 519
Target Start/End: Complemental strand, 34105907 - 34105401
Alignment:
| Q |
7 |
tatagacccttcatgaatttgcatccttcagaagctcgatcgagatacaatatgaatggaaaataccctaccctacaatataggaaatctgatgctatag |
106 |
Q |
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| T |
34105907 |
tatagacccttcttgaatttgcatccttcagaagctcga----gatacaatatgaatggaaaataccctaccctacaatataggaaatctgatgctatag |
34105812 |
T |
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| Q |
107 |
ataagaatgatttctttacattgacctacaaaatactagttaaaattaaccttaagccaagttagcacaaaccatatgagaatatcatctgcattctata |
206 |
Q |
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| T |
34105811 |
ataagaatgattcctttacatagacctacaaaatactagttaaaattaaccttaagccaagttagcacaaaccatatgagaatatcatctgcattctata |
34105712 |
T |
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| Q |
207 |
gatgttggacaatgatccccaagcaaatgaggattcttcaacttgggatctaaagtgatgataaaggatgaaagtctcccaggtagattggcattgatga |
306 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34105711 |
gatgttggactat--tccccaagcaaatgaggattcttcaacttgggatctaaagtgatgataaaggatgaaagtctcctaggtagattggcattgatga |
34105614 |
T |
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| Q |
307 |
agtcattgaagaaaatcccctaggtttcaaaaagatttgatgaaggtaaagttacacttatttaacccctacaattgtattccatgcataagacatcaca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
34105613 |
agtcattgaagaaaatcccctaggtttcaaaaagatttgatgaaagtaaagttacacttatttaacccctacaattttattccctgcataagacatcaca |
34105514 |
T |
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| Q |
407 |
cccatttcttcaaagtaaaaggagcatccagtactcgtttagaaacaaagacaccaaaggaaaagacatcacagtttcttcaatctatttcatgtcacac |
506 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34105513 |
cctatttcttcaaagtaaaaggagcatccagtactcgtttagaaacaaagacaccaaaggaaaagacatcacagtttcttcaatctatttcatgtcacac |
34105414 |
T |
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| Q |
507 |
taatgattgatca |
519 |
Q |
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| T |
34105413 |
taatgattgatca |
34105401 |
T |
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