View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3538_low_7 (Length: 509)
Name: NF3538_low_7
Description: NF3538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3538_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 12203994 - 12204375
Alignment:
| Q |
1 |
ttctaattaattctatataattatcttaattattgacttcttcatgtcgtataaaatggaaagtagctcggctttgctttatctctaggctaatatagaa |
100 |
Q |
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| T |
12203994 |
ttctaattaattctatataattatcttaattattgatttcttcatgacgtataaaatggaaagtagctcgactttgctttatctctaggctaatatagaa |
12204093 |
T |
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| Q |
101 |
ttatcaccttccttagttccaaaaactttgatgtgaaacaaataaaattgtatgaaatggctcatgtgcataacttctatccctttttccacgatcagtt |
200 |
Q |
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| T |
12204094 |
ttgtcaccttccttagttccaaaaactttgatgtgaaacagataaaattgtatgaaatggctcatgtgcataacttctatccctttttccacgatcagtt |
12204193 |
T |
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| Q |
201 |
tttaatcgtatatagataattgtttcctttcaaggtggataaaggggactcatatagttggcataaatgtttgaaattagttatatattaagattatttt |
300 |
Q |
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| T |
12204194 |
tttaatcgtatatagataattgtttcctttcaaggtggataaaggggactcatatagttggcataaatgtttgaaattagttatatattaagattatttt |
12204293 |
T |
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| Q |
301 |
attttaggtgtattgattgtgtgccatcacataccaacattttaaatgaaatataattgatgttatgcatgtagactaatca |
382 |
Q |
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| T |
12204294 |
attttaggtgtattgattgtgtgccatcacataccaacattttaaatgaaatataattgatgttatgcatgtagactaatca |
12204375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 12204437 - 12204497
Alignment:
| Q |
437 |
tcacgtgcttctcaatgattattgggaattagtgaccaaatgtttgtatactacatatatt |
497 |
Q |
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| T |
12204437 |
tcacgtgcttctcaatgattattgggaattagtgaccaaatgtttgtatactacatatatt |
12204497 |
T |
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