View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_high_11 (Length: 403)
Name: NF3539_high_11
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 40832538 - 40832909
Alignment:
| Q |
16 |
acagcgacaagaagaatggcatgaactccacactcttggttttgatcactaatctctgcatataattaaaaatccacaattaatggcatgttttgaaatt |
115 |
Q |
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| T |
40832538 |
acagcgacaagaagaatggcatgaactccacactcttggttttgatcactaatctctgcatataattaaaaatccacaattaatggcatgttttgaaatt |
40832637 |
T |
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| Q |
116 |
tggcttgataatattacattaactagtatattttgagtcattaatattggatatcagaaaattttgtttcagaggtaatttattttgaaactatgtgtct |
215 |
Q |
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| T |
40832638 |
tggcttgatagtattacattaactagtatattttgagtcattaatattggatatcagaaaattttgtttcagaggtaatttattttgaaactatgtgtct |
40832737 |
T |
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| Q |
216 |
taaatctgcgtagaagtcatatttgtgcaaatgctcgagtatcttactagttgatnnnnnnnntcgttgtgctgtaaatttggcttaccataattgagag |
315 |
Q |
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| T |
40832738 |
taaatctgcgtagaagtcatatttgtgcaaatgctcgagtatcttactagttgataaaaaaaatggttgtgccgtaaatttggcttaccataattgagag |
40832837 |
T |
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| Q |
316 |
tggagaaccatacatgatgacggaaaatatagccatggcaaagccgcagaaggccttcctatgattgccatg |
387 |
Q |
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| T |
40832838 |
tggagaaccatacatgatgacggaaaatatagccatggcaaagccgcagaaggccttcctatgattgccatg |
40832909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 10055803 - 10055754
Alignment:
| Q |
26 |
gaagaatggcatgaactccacactcttggttttgatcactaatctctgca |
75 |
Q |
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| T |
10055803 |
gaagaatggcatgaactccacactctttgttttgatcactagtctctgca |
10055754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 10055131 - 10055085
Alignment:
| Q |
299 |
cttaccataattgagagtggagaaccatacatgatgacggaaaatat |
345 |
Q |
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| T |
10055131 |
cttaccataattgagagtggtgaaccatacatgatgattgaaaatat |
10055085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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