View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_high_12 (Length: 399)
Name: NF3539_high_12
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_12 |
 | |
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| [»] scaffold0045 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 17682353 - 17682751
Alignment:
| Q |
1 |
cgttgctctctcccttcatcaacaatgctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctctcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |
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| T |
17682353 |
cgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttttccctttctatgaattgaattgtgttttgagattaatcactctccacctctcaa |
17682452 |
T |
|
| Q |
101 |
t----tgtttcttcaattccatt----attggtaataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagtt |
192 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17682453 |
tatattgtttcttcaattccattcattattggtaataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagtt |
17682552 |
T |
|
| Q |
193 |
gacgattcagtttcatctcaatttcatccctcactttcatcttctctgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagat |
292 |
Q |
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|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17682553 |
gacgattcagtttcatctcagtttcacccctcactttcatcttctctgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagat |
17682652 |
T |
|
| Q |
293 |
ggaacaagactgtagcataaacatggaatggaacattggtgtatcagttgtaggtgctccctctctcactatgtttcctctctcactgcagttcatctc |
391 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17682653 |
ggaacaagactgtagcagaaacatggaatggaacattggtgtatcagttgtaggtgctccctctctcactatgtttcctctctcactgcagttcatctc |
17682751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 19766627 - 19766930
Alignment:
| Q |
1 |
cgttgctctctcccttcatcaacaatgctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattac--tctccacctctc |
98 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||||||||||| |
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| T |
19766627 |
cgttgctctctccattcatcaacaatgctctcaaggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcacactctccacctctc |
19766726 |
T |
|
| Q |
99 |
aattgtttcttcaattccattattggtaataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttgacgat |
198 |
Q |
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| ||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
19766727 |
agttgtttcttcaattccattc-----------------attaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgat |
19766809 |
T |
|
| Q |
199 |
tcagtttcatctcaatttcatccctcactttcatcttctctgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagatggaaca |
298 |
Q |
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|
|||||||||||||| ||||| |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19766810 |
tcagtttcatctcagtttcacccctcactttcatcttttctgttttggcaacgattcaatttcgaccgttgaggtaagaagtatgggatgaaatggaaca |
19766909 |
T |
|
| Q |
299 |
agactgtagcataaacatgga |
319 |
Q |
| |
|
||| ||||||| ||||||||| |
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| T |
19766910 |
agattgtagcagaaacatgga |
19766930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 207 - 369
Target Start/End: Complemental strand, 53559328 - 53559167
Alignment:
| Q |
207 |
atctcaatttcatccctcactttcatcttctctgttttggcgatgattcaatttcgaccgttgaggtaagaagtatgggatgagatggaacaagactgta |
306 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||||||| | ||||||||| || |||||||||||||||||| |||| ||||||||||| |||| |
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| T |
53559328 |
atctcagtttcacccctcactttcatcttctcagttttggcgacggttcaatttcaacttttgaggtaagaagtatggaatgaaatggaacaagattgta |
53559229 |
T |
|
| Q |
307 |
gcataaacatggaatggaacattggtgtatcagttgtaggtgctccctctctcactatgtttc |
369 |
Q |
| |
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||| || |||||||||||||| || ||||| |||| ||||| |||||||||||| ||| |||| |
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| T |
53559228 |
gcagaagcatggaatggaaca-tgatgtattagttttaggtactccctctctcaatatttttc |
53559167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 22292201 - 22292032
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctctcaattgtttcttcaattccatt-att--gg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||||||||| |||||||||||||| |||| ||| |
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| T |
22292201 |
ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaattactctccacctctcagttgtttcttcaattgcattcattaatt |
22292102 |
T |
|
| Q |
125 |
taataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttga |
194 |
Q |
| |
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| ||||||||||||||| ||||||||||| ||| ||||||| |||||| ||||| ||||| |||||||| |
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| T |
22292101 |
ttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttga |
22292032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 29862857 - 29862802
Alignment:
| Q |
42 |
gcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||||| |||| ||||||||||||| |
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|
| T |
29862857 |
gcttttctctttctatgaattgaattgtgttatgagtctaatcactctccacctct |
29862802 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 15434227 - 15434058
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctctcaattgtttcttcaattccatt-att--gg |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||| |||||||| ||| |||| || |||||||||||| ||||||||||||||||||| ||| |
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|
| T |
15434227 |
ctctcaacgtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatcaccctccacctctcagttgtttcttcaattccattcattaatt |
15434128 |
T |
|
| Q |
125 |
taataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttga |
194 |
Q |
| |
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| ||||||||||||||| ||||||||| | |||||||||||||||||| ||||| ||| | |||||||| |
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|
| T |
15434127 |
ttgtaaatttgcaattagattcacaacagaatcagatttgggtctctgatgagaacaggctaatagttga |
15434058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 10093072 - 10093141
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
10093072 |
ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct |
10093141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 33044953 - 33044884
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
33044953 |
ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatcactctccacctct |
33044884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 11141 - 11072
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
11141 |
ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct |
11072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 5658370 - 5658439
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
5658370 |
ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct |
5658439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 14677529 - 14677460
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| |
|
|
| T |
14677529 |
ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtccaatcactctccacctct |
14677460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 31100379 - 31100310
Alignment:
| Q |
28 |
ctctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
31100379 |
ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatcactctccacctct |
31100310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 35676 - 35744
Alignment:
| Q |
29 |
tctcaaggtaatcgcttttccctttctatgaattgaactgtgttttgagtttaattactctccacctct |
97 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| ||||||||||||| |
|
|
| T |
35676 |
tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatcactctccacctct |
35744 |
T |
|
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