View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3539_high_16 (Length: 331)

Name: NF3539_high_16
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3539_high_16
NF3539_high_16
[»] chr5 (2 HSPs)
chr5 (12-286)||(29439206-29439468)
chr5 (191-280)||(5430936-5431027)
[»] chr7 (2 HSPs)
chr7 (191-286)||(36008935-36009032)
chr7 (245-286)||(36009689-36009730)
[»] chr2 (2 HSPs)
chr2 (190-286)||(41976760-41976858)
chr2 (192-237)||(34607104-34607149)
[»] chr3 (1 HSPs)
chr3 (241-286)||(51326793-51326838)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 29439206 - 29439468
Alignment:
Q  12 agagaagggtgtgaaaagatgatgagggtggtgcaaaaaaccaacttcagcaataaactccattaaacatgaagacaacaatggaatttgacagtgatga 111  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||           
T  29439206 agagaagggtgtgaaaaggtgatgagggtggtgcaaaaaaccaacttcagcaataaactccattaa-catgaagacaacaatggaatttgaca------- 29439297  T
Q  112 ggagacacgagttcatgagtttgtgttagcacaaagagtggagtgtgtgaagaaatgaagaggtttggataaaagatagggattcggattcaataacttt 211  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  29439298 -------cgagttcatgagtttgtgttagcacaaagagtggagtgtgtgaagaaatgaagaggtttggataaaatatagggatccggattcaataacttt 29439390  T
Q  212 t-gggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacttgtt 286  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29439391 tagggtgggaaaagttatgtgactttgttcaatatccaccattggtttaatctcttggttcagattttgacacatgtt 29439468  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 5430936 - 5431027
Alignment:
Q  191 ggattcggattcaataacttttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgaca 280  Q
    |||| |||||||||| ||||||| | ||||||||||||||||||||  ||  |||||||||||||||||| |  ||| ||||||||||||||    
T  5430936 ggatccggattcaatgacttttgagagggaaaagttatgtgactttagtcaatatccaccattggtttaaccctttgcttcagattttgaca 5431027  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 286
Target Start/End: Original strand, 36008935 - 36009032
Alignment:
Q  191 ggattcggattcaataacttttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacttgtt 286  Q
    |||| ||||||||  ||||||| ||||||||||||||| |||||||||||  |||| | |||||||||||||||||||||||||||||||||| ||||    
T  36008935 ggatccggattcagcaactttttggtgggaaaagttatatgactttgttcaatatctatcattggtttaatctcttggttcagattttgacacatgtt 36009032  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 36009730 - 36009689
Alignment:
Q  245 caccattggtttaatctcttggttcagattttgacacttgtt 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  36009730 caccattggtttaatctcttggttcagattttgacacatgtt 36009689  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 41976760 - 41976858
Alignment:
Q  190 gggattcggattcaataacttttgggtgggaaaagttatgtgactttgttc--tatccaccattggtttaatctcttggttcagattttgacacttgtt 286  Q
    ||||| |||||||| |||||||| |||||||||||| || |||||||| ||  ||||||||||||  ||||||| |||||||||||||| |||| ||||    
T  41976760 gggatccggattcagtaactttttggtgggaaaagtcatatgactttgctcaatatccaccattgaattaatcttttggttcagattttaacacatgtt 41976858  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 34607149 - 34607104
Alignment:
Q  192 gattcggattcaataacttttgggtgggaaaagttatgtgactttg 237  Q
    ||||| |||||| ||||||||||| ||||||||||||| |||||||    
T  34607149 gattcagattcagtaacttttgggagggaaaagttatgagactttg 34607104  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 51326793 - 51326838
Alignment:
Q  241 tatccaccattggtttaatctcttggttcagattttgacacttgtt 286  Q
    |||| |||||| ||||||||| ||||||||||||||||||| ||||    
T  51326793 tatctaccattagtttaatcttttggttcagattttgacacatgtt 51326838  T

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