View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_high_22 (Length: 301)
Name: NF3539_high_22
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 37421517 - 37421614
Alignment:
| Q |
1 |
aaatatattgtaggataaacatggtagtattaacagagtattttaacgtgcgagaatattttgatcaatagaatccacaattaaagaccattttaaaa |
98 |
Q |
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| T |
37421517 |
aaatatattgaaggataaacatggtagtattaacagaggattttaacatgcgagaatattttgatcaatagaatccacaattaaagaccattttaaaa |
37421614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 37421969 - 37422030
Alignment:
| Q |
225 |
gcgtatctctttgcacctagataaattatgtatgatgatcaagaccaccgataaatatgtat |
286 |
Q |
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| T |
37421969 |
gcgtatctctttgcaccaagataaattatgtatgatgatcaagaccactgataaatatgtat |
37422030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 37421831 - 37421867
Alignment:
| Q |
126 |
tcactatttgctctattgttgaagtattaacaatttt |
162 |
Q |
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| T |
37421831 |
tcactatttgctctattgttgaagtattaacaatttt |
37421867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 10477896 - 10477928
Alignment:
| Q |
240 |
cctagataaattatgtatgatgatcaagaccac |
272 |
Q |
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| T |
10477896 |
cctagaaaaattatgtatgatgatcaagaccac |
10477928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 8234311 - 8234369
Alignment:
| Q |
52 |
gagaatattttgatcaatagaatccacaattaaagaccattttaaaattttgatatatt |
110 |
Q |
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| T |
8234311 |
gagattattttgattaacagaatgcacaattaaaaactattttaaaattttgatatatt |
8234369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 22332674 - 22332706
Alignment:
| Q |
240 |
cctagataaattatgtatgatgatcaagaccac |
272 |
Q |
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| T |
22332674 |
cctagataaattatgtatgatgatcaagaccac |
22332706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 14523770 - 14523734
Alignment:
| Q |
77 |
acaattaaagaccattttaaaattttgatatattaaa |
113 |
Q |
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| T |
14523770 |
acaattaaatatcattttaaaattttgatatattaaa |
14523734 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 24444397 - 24444457
Alignment:
| Q |
57 |
tattttgatcaatagaatccacaattaaagaccattttaaaattttgatatattaaagaac |
117 |
Q |
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| T |
24444397 |
tattttgattaacaaaatacacaatcaaataccattttaaaatttggatatattgaagaac |
24444457 |
T |
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