View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3539_high_27 (Length: 280)
Name: NF3539_high_27
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_27 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 20994076 - 20994346
Alignment:
| Q |
11 |
atgaattagtgacattatgtcttgtaggagcgtatggtgcttttctcgttgcttgctatgacaacgaacgcaacgaatttcaaagtattgtcaagctagg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20994076 |
atgaattagtgacattatgtcttgtaggagtgtatggtgcttttctcgttgcttgctatgacaacgaacgcaacgaatttcaaagtattgtcaggctagg |
20994175 |
T |
|
| Q |
111 |
tgagtgttttatgctgtatagcgttcttttgtttattaaacttaattttctgacttattcttcatgttat-gtgggcagcaactggattcaaagagcaag |
209 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20994176 |
tgagcgttttatgctgtatagcgttattttgtttattaaacttaattttctgacttattcttcatgttatggtgggcagcaactggattcaaagagcaag |
20994275 |
T |
|
| Q |
210 |
agcttaaagaacgttctactatccttcgctctaaagtgattcccaaaccaaaggtccctcgctcttgtttc |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20994276 |
agcttaaagaacgttctactatccttcgctctaaagtgattcccaaaccaaaggtccctcgctcttgtttc |
20994346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 21004406 - 21004507
Alignment:
| Q |
179 |
atgtgggcagcaactggattcaaagagcaagagcttaaagaacgttctactatccttcgctctaaagtgattcccaaaccaaaggtccctcgctcttgtt |
278 |
Q |
| |
|
||||||| || ||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
21004406 |
atgtgggtaggaactggattcaaagaagaagtgcttgaagaacgttctactagccttcgctctaaagtgattcccaaaccaaaggttgctggctcttgtt |
21004505 |
T |
|
| Q |
279 |
tc |
280 |
Q |
| |
|
|| |
|
|
| T |
21004506 |
tc |
21004507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 21004233 - 21004376
Alignment:
| Q |
28 |
tgtcttgtaggagcgtatggtgcttttctcgttgcttgctatgacaacgaacgcaacgaatttcaaagtattgtcaagctaggtgagtgttttatgctgt |
127 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||| | || |||||||| ||| ||| |||||||| |||||||| ||| |
|
|
| T |
21004233 |
tgtcttgtaggagtgtatggtgcttttctccttgcttgctatgacaacgataatgaggagtttcaaagcatttgtaagataggtgagcgttttatgttgt |
21004332 |
T |
|
| Q |
128 |
atagcgttcttttgtttattaaacttaattttctgacttattct |
171 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
21004333 |
atagagctcttttgtttattgaacttaattttctcactttttct |
21004376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University