View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_high_30 (Length: 270)
Name: NF3539_high_30
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 10975231 - 10975392
Alignment:
| Q |
18 |
aaaaagatactaaaatagcatgatctacaattcattttcaaataacttagatatggtctaactcaactcttacaaaacagatttgtgaggttagaactat |
117 |
Q |
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| T |
10975231 |
aaaaagatactaaaatagcatgatctacaattcattttcaaataacttagatatggtctaactcaactcttacaaaacagatttgtgaggttagaactat |
10975330 |
T |
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| Q |
118 |
tgatcacttataaacacattttcaagcgtatattagtgtgagactatttattaaccataatt |
179 |
Q |
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| T |
10975331 |
tgatcacttataaacacattttcaagcgtatattagtgtgagactatttattaaccataatt |
10975392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 10975395 - 10975424
Alignment:
| Q |
196 |
aaaatgttaatcaaattcgtcctctaattt |
225 |
Q |
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| T |
10975395 |
aaaatgttaatcaaattcgtcctctaattt |
10975424 |
T |
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