View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_high_33 (Length: 253)
Name: NF3539_high_33
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 34137374 - 34137560
Alignment:
| Q |
50 |
tctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcaga |
149 |
Q |
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| T |
34137374 |
tctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcaga |
34137473 |
T |
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| Q |
150 |
tggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
236 |
Q |
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| T |
34137474 |
tggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
34137560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 34133463 - 34133649
Alignment:
| Q |
50 |
tctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcaga |
149 |
Q |
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||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
34133463 |
tctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcaga |
34133562 |
T |
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| Q |
150 |
tggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
236 |
Q |
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| T |
34133563 |
tggatttggaactgcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttggtctgtg |
34133649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 34141037 - 34141223
Alignment:
| Q |
50 |
tctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcaga |
149 |
Q |
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||||||| |||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||| |||||||| |||| |
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| T |
34141037 |
tctgcctgagactcaaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcaga |
34141136 |
T |
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| Q |
150 |
tggatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
34141137 |
tggatttggaacttcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
34141223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 52 - 236
Target Start/End: Original strand, 34127192 - 34127376
Alignment:
| Q |
52 |
tgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatg |
151 |
Q |
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||||||| |||| ||||||| |||||||||| ||||| ||||| ||||| || ||||||||||||||||| | |||||| ||| | |||||| ||||| |
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| T |
34127192 |
tgcctaatactcaaagggacctcatggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatcaatagcagatt |
34127291 |
T |
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| Q |
152 |
gatttggaacttcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
236 |
Q |
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||| | ||||||||| |||||||||||| |||||||||||| |||||||||||| |||||||||||| || |||||||||||||| |
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| T |
34127292 |
gatcttgaacttcatggtggaatattggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttggtctgtg |
34127376 |
T |
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