View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3539_high_4 (Length: 478)

Name: NF3539_high_4
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3539_high_4
NF3539_high_4
[»] chr3 (34 HSPs)
chr3 (209-446)||(47767860-47768091)
chr3 (322-446)||(37054830-37054948)
chr3 (325-446)||(42005473-42005588)
chr3 (322-446)||(30766987-30767105)
chr3 (213-326)||(54419193-54419307)
chr3 (325-446)||(7302827-7302942)
chr3 (325-442)||(2105168-2105279)
chr3 (321-442)||(47283790-47283911)
chr3 (322-412)||(53469948-53470037)
chr3 (314-412)||(36397500-36397597)
chr3 (324-419)||(26547434-26547527)
chr3 (325-412)||(34089039-34089125)
chr3 (353-412)||(35279497-35279556)
chr3 (322-412)||(645732-645821)
chr3 (322-412)||(48948045-48948134)
chr3 (319-412)||(24241705-24241797)
chr3 (325-446)||(52527444-52527559)
chr3 (325-412)||(43863486-43863572)
chr3 (351-412)||(28181823-28181884)
chr3 (325-412)||(21307111-21307197)
chr3 (323-404)||(31188918-31188997)
chr3 (356-412)||(6836590-6836646)
chr3 (325-412)||(38506484-38506570)
chr3 (351-412)||(48824659-48824720)
chr3 (361-421)||(46707079-46707139)
chr3 (356-412)||(53129456-53129512)
chr3 (325-412)||(671188-671274)
chr3 (325-412)||(7977014-7977100)
chr3 (351-446)||(13339116-13339206)
chr3 (329-412)||(34396148-34396230)
chr3 (381-420)||(46636304-46636343)
chr3 (379-412)||(15760159-15760192)
chr3 (351-412)||(28092127-28092187)
chr3 (356-446)||(55460700-55460785)
[»] chr5 (24 HSPs)
chr5 (321-446)||(22303384-22303503)
chr5 (213-326)||(2840109-2840223)
chr5 (322-412)||(12480363-12480452)
chr5 (327-419)||(10315105-10315196)
chr5 (329-446)||(37241163-37241274)
chr5 (351-412)||(15270442-15270503)
chr5 (319-412)||(41761738-41761830)
chr5 (322-412)||(22304646-22304735)
chr5 (324-412)||(6771822-6771909)
chr5 (319-375)||(35111711-35111766)
chr5 (325-412)||(28490369-28490456)
chr5 (325-408)||(32249649-32249731)
chr5 (322-408)||(17541881-17541966)
chr5 (326-412)||(37091050-37091135)
chr5 (325-412)||(927764-927850)
chr5 (353-412)||(22304761-22304820)
chr5 (325-412)||(33995444-33995530)
chr5 (327-412)||(28489925-28490009)
chr5 (323-446)||(15579996-15580115)
chr5 (353-420)||(18442957-18443024)
chr5 (327-401)||(14835265-14835338)
chr5 (324-389)||(13390961-13391025)
chr5 (323-412)||(33146544-33146632)
chr5 (364-412)||(31368315-31368363)
[»] chr2 (29 HSPs)
chr2 (321-446)||(7167184-7167303)
chr2 (325-446)||(30698715-30698830)
chr2 (327-441)||(7611421-7611529)
chr2 (321-446)||(32839184-32839303)
chr2 (325-412)||(7309436-7309522)
chr2 (322-412)||(35047198-35047287)
chr2 (325-412)||(769495-769581)
chr2 (353-412)||(11595268-11595327)
chr2 (353-412)||(11607170-11607229)
chr2 (325-412)||(33188789-33188875)
chr2 (325-446)||(3092680-3092795)
chr2 (381-446)||(7227615-7227675)
chr2 (323-412)||(8735963-8736051)
chr2 (325-412)||(1583332-1583418)
chr2 (321-412)||(13018208-13018298)
chr2 (324-419)||(32839714-32839808)
chr2 (325-412)||(44256097-44256183)
chr2 (323-412)||(14306362-14306450)
chr2 (325-412)||(2925114-2925200)
chr2 (325-412)||(19231017-19231102)
chr2 (353-404)||(30265802-30265853)
chr2 (325-412)||(39630689-39630775)
chr2 (323-408)||(28021704-28021788)
chr2 (321-412)||(21504913-21505003)
chr2 (369-446)||(45094045-45094117)
chr2 (325-401)||(19072305-19072380)
chr2 (325-412)||(17906105-17906191)
chr2 (325-404)||(31703923-31704001)
chr2 (327-412)||(11141768-11141852)
[»] chr8 (27 HSPs)
chr8 (322-446)||(24051706-24051824)
chr8 (327-446)||(24045398-24045511)
chr8 (323-446)||(28324221-28324338)
chr8 (325-419)||(36624810-36624903)
chr8 (322-444)||(44890034-44890150)
chr8 (322-420)||(9983103-9983200)
chr8 (322-412)||(44346218-44346307)
chr8 (321-412)||(29611786-29611876)
chr8 (325-412)||(33376829-33376915)
chr8 (326-412)||(31980047-31980132)
chr8 (323-412)||(29256911-29256999)
chr8 (323-412)||(29482339-29482427)
chr8 (325-412)||(14701-14787)
chr8 (325-412)||(43185443-43185529)
chr8 (326-412)||(31976666-31976751)
chr8 (319-412)||(33986460-33986552)
chr8 (361-408)||(31976153-31976200)
chr8 (327-412)||(8049640-8049724)
chr8 (323-412)||(35978590-35978678)
chr8 (331-412)||(40733641-40733721)
chr8 (326-446)||(10593507-10593620)
chr8 (353-446)||(1087873-1087961)
chr8 (327-412)||(26519984-26520068)
chr8 (323-412)||(34009152-34009240)
chr8 (379-420)||(35404339-35404380)
chr8 (353-389)||(8469885-8469921)
chr8 (351-403)||(28190256-28190308)
[»] scaffold0400 (1 HSPs)
scaffold0400 (323-446)||(4018-4135)
[»] scaffold0365 (1 HSPs)
scaffold0365 (323-446)||(4662-4779)
[»] chr1 (23 HSPs)
chr1 (328-442)||(44571116-44571224)
chr1 (325-446)||(37447426-37447541)
chr1 (325-442)||(39887504-39887615)
chr1 (213-326)||(51854160-51854274)
chr1 (325-446)||(37036504-37036619)
chr1 (325-446)||(37446883-37446998)
chr1 (323-442)||(8225211-8225324)
chr1 (315-412)||(15467476-15467572)
chr1 (325-405)||(41822752-41822831)
chr1 (325-412)||(946843-946929)
chr1 (321-412)||(35499512-35499602)
chr1 (322-412)||(6470225-6470315)
chr1 (319-412)||(21267340-21267432)
chr1 (353-446)||(32647727-32647815)
chr1 (325-412)||(28632126-28632212)
chr1 (323-401)||(220627-220704)
chr1 (330-412)||(41822078-41822159)
chr1 (353-446)||(50472150-50472238)
chr1 (353-401)||(10166969-10167017)
chr1 (325-393)||(37447971-37448038)
chr1 (322-408)||(32128551-32128636)
chr1 (366-412)||(32202215-32202261)
chr1 (323-412)||(4663774-4663861)
[»] chr7 (25 HSPs)
chr7 (323-446)||(41442601-41442718)
chr7 (177-268)||(18479143-18479235)
chr7 (323-446)||(23548117-23548234)
chr7 (323-412)||(45984797-45984885)
chr7 (323-412)||(45989157-45989245)
chr7 (327-419)||(13814504-13814595)
chr7 (325-412)||(39342160-39342246)
chr7 (325-419)||(40495656-40495749)
chr7 (323-412)||(28538675-28538763)
chr7 (323-412)||(36328326-36328414)
chr7 (325-412)||(2411775-2411861)
chr7 (325-412)||(14602771-14602857)
chr7 (323-412)||(35456268-35456356)
chr7 (323-412)||(42816986-42817074)
chr7 (323-412)||(43791485-43791573)
chr7 (264-326)||(18484235-18484297)
chr7 (327-420)||(38320734-38320825)
chr7 (353-408)||(30080335-30080390)
chr7 (353-412)||(40496182-40496241)
chr7 (351-412)||(30587455-30587516)
chr7 (353-446)||(46699774-46699862)
chr7 (322-373)||(14790570-14790620)
chr7 (322-412)||(45181754-45181842)
chr7 (323-421)||(26416375-26416471)
chr7 (327-408)||(9784455-9784536)
[»] chr4 (25 HSPs)
chr4 (213-326)||(6980816-6980930)
chr4 (325-419)||(54566629-54566722)
chr4 (322-412)||(2126300-2126389)
chr4 (320-446)||(42775775-42775895)
chr4 (325-419)||(24705785-24705878)
chr4 (322-412)||(35470586-35470675)
chr4 (316-412)||(47108682-47108777)
chr4 (323-412)||(40547766-40547854)
chr4 (325-412)||(41139934-41140020)
chr4 (325-446)||(46242622-46242737)
chr4 (353-421)||(26534941-26535009)
chr4 (328-412)||(42776547-42776630)
chr4 (323-398)||(16516644-16516718)
chr4 (323-446)||(30303553-30303670)
chr4 (326-412)||(13318216-13318300)
chr4 (323-412)||(21782435-21782523)
chr4 (351-412)||(27284245-27284306)
chr4 (356-412)||(17727508-17727564)
chr4 (354-410)||(46242194-46242250)
chr4 (325-412)||(28751744-28751830)
chr4 (322-393)||(29091606-29091676)
chr4 (350-412)||(5579675-5579737)
chr4 (356-404)||(17727881-17727929)
chr4 (323-375)||(53760322-53760373)
chr4 (333-393)||(56339549-56339608)
[»] chr6 (9 HSPs)
chr6 (327-420)||(15833062-15833154)
chr6 (322-419)||(31413316-31413412)
chr6 (325-412)||(8475592-8475678)
chr6 (323-412)||(1368939-1369027)
chr6 (325-412)||(724811-724897)
chr6 (325-374)||(9697889-9697937)
chr6 (324-412)||(10105469-10105556)
chr6 (353-412)||(6357852-6357911)
chr6 (325-412)||(15615920-15616006)
[»] scaffold0337 (1 HSPs)
scaffold0337 (342-446)||(15954-16052)
[»] scaffold0047 (1 HSPs)
scaffold0047 (327-442)||(49838-49947)
[»] scaffold0417 (1 HSPs)
scaffold0417 (328-412)||(11499-11582)
[»] scaffold0318 (1 HSPs)
scaffold0318 (324-412)||(3320-3407)
[»] scaffold0301 (1 HSPs)
scaffold0301 (353-412)||(7615-7674)
[»] scaffold0169 (1 HSPs)
scaffold0169 (325-412)||(4482-4568)
[»] scaffold0065 (1 HSPs)
scaffold0065 (342-404)||(2996-3057)
[»] scaffold0129 (1 HSPs)
scaffold0129 (353-412)||(19334-19393)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 209 - 446
Target Start/End: Complemental strand, 47768091 - 47767860
Alignment:
Q  209 aataataaccaagtgctgtgttgcaaaagattccaaactcatcgatggtgtctctcactccgacgctgaaacatccgttgttgaaaattgcagctcgtcg 308  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||    
T  47768091 aataataaccaagtacggtgttgcaaaagattccaaactcatcgatggtgtctctcactccgacgctaaaacgtccgttgttgaaaattgcagctcgccg 47767992  T
Q  309 gaaggtcaataacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||    
T  47767991 gaaggtcaataacctaagagtgtgtttggatggagtatttgag-aaattttgaagaatttagaattcaagataattcaaatgattcaattaaattgcttt 47767893  T
Q  409 cattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||||||     |||||||||||||||||||||||    
T  47767892 cattcttaaa-----tattattgtttggatggagtaat 47767860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 37054948 - 37054830
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||       
T  37054948 ctaagagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcttaaa--- 37054853  T
Q  422 agtattattgtttggatggagtaat 446  Q
      |||||||||||||||||||||||    
T  37054852 --tattattgtttggatggagtaat 37054830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 42005473 - 42005588
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||       
T  42005473 agagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcttaaatac--- 42005568  T
Q  425 attattgtttggatggagtaat 446  Q
      ||||||||||||||||||||    
T  42005569 --tattgtttggatggagtaat 42005588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 30767105 - 30766987
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||       
T  30767105 ctaagagtgtgtttgaatggagtgtttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgttttcattcttaaa--- 30767010  T
Q  422 agtattattgtttggatggagtaat 446  Q
      |||||||||||||||||||||||    
T  30767009 --tattattgtttggatggagtaat 30766987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 54419193 - 54419307
Alignment:
Q  213 ataaccaagtgctgtgttgcaaaagattcc-aaactcatcgatggtgtctctcactccgacgctgaaacatccgttgttgaaaattgcagctcgtcggaa 311  Q
    |||||||||||| ||||||| |||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||| |||| |||||    
T  54419193 ataaccaagtgcggtgttgccaaagatccccaaactcatcgatggtgtctctcactccgacgccgaaacttccgttgttgagaatcgcaactcgccggaa 54419292  T
Q  312 ggtcaataacctaag 326  Q
    |||||||||||||||    
T  54419293 ggtcaataacctaag 54419307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 7302942 - 7302827
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||     |    
T  7302942 agagtgtgtttggattgagtatttgagaaa-ttttgaagaatttagaattctagataattcatatgattcaattaaattgctttcattcttaaa-----t 7302849  T
Q  425 attattgtttggatggagtaat 446  Q
    ||||||||||||||||||||||    
T  7302848 attattgtttggatggagtaat 7302827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 2105279 - 2105168
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||     |    
T  2105279 agagtgtgtttggatggagtaattgagaaa-ttttgaagaatttataattctaggtaatttaaatgattcaattaaattggtttcattcttaaa-----t 2105186  T
Q  425 attattgtttggatggag 442  Q
    ||||||||||||||||||    
T  2105185 attattgtttggatggag 2105168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 321 - 442
Target Start/End: Original strand, 47283790 - 47283911
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaa-----aattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattctt 415  Q
    ||||||||||||||||||||||||| |||||||     |||||| ||||||||| ||||  |||||||| |||||||||| |||||||||||||||||||    
T  47283790 cctaagagtgtgtttggatggagtaattgagaatgagaaattttgaagaatttaaaattttaagtaatttaaatgattcatttaaattgctttcattctt 47283889  T
Q  416 aaatacagtattattgtttggatggag 442  Q
    |||     |||||||||||||||||||    
T  47283890 aaa-----tattattgtttggatggag 47283911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 53469948 - 53470037
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  ||| |||||||| |||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||    
T  53469948 ctaagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggtaatttaaatgattcaattaaattactttcatt 53470037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 314 - 412
Target Start/End: Original strand, 36397500 - 36397597
Alignment:
Q  314 tcaataacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||| ||||||||||||||||||||  ||| |||||||| |||||||||||||||||||| |   |||| |||||||||||||||||| ||||||||    
T  36397500 tcaatatcctaagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctagacaatttaaatgattcaattaaattactttcatt 36397597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 26547527 - 26547434
Alignment:
Q  324 aagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    |||||||||||||||||| ||| |||||||  |||| | ||||||||||||  | | |||||||||||||||||| ||||||||||||||||||||    
T  26547527 aagagtgtgtttggatggggtaattgagaa--ttttgatgaatttagaattttagggaattcaaatgattcaattcaattgctttcattcttaaat 26547434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 34089125 - 34089039
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  34089125 agagtgtgtttggatgatgtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 34089039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 35279497 - 35279556
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||    
T  35279497 aaattttaaagaatttagaattctaagtaatttaaatgattcaattaaattactttcatt 35279556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 645732 - 645821
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||| ||| ||||||||||  ||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||||    
T  645732 ctaatagtatgtttggatgaggtaattg-gaaaattttaaagaatttagaattccaagtaattcaaatgattcgattaaattattttcatt 645821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 48948134 - 48948045
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||| ||||||||||  ||| |||| |||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  48948134 ctaagagtatgtttggatgaggtaattga-aaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 48948045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 24241705 - 24241797
Alignment:
Q  319 aacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||  ||| ||||| ||||||||||||||||||||| | |   |||| |||||||||||||||||| ||||||||    
T  24241705 aacctaagagtgtgtttggatgaggtaattgag-aaattttaaagaatttagaatcctagacaatttaaatgattcaattaaattactttcatt 24241797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 52527559 - 52527444
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||  ||| ||| |||||||||||| |||||||||||| ||  |||| |||||||||||||||||| |||| ||| ||||||||       
T  52527559 agagtgtgtttggatgaggtaattg-gaaaattttaaaaaatttagaattctaaaaaatttaaatgattcaattaaattacttttatttttaaatac--- 52527464  T
Q  425 attattgtttggatggagtaat 446  Q
      | ||||||||||||||||||    
T  52527463 --ttttgtttggatggagtaat 52527444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 43863486 - 43863572
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||| |  ||| |||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||  |||||||    
T  43863486 agagtgtgtttggacgaggtaattgagaaa-ttttaaagaatttagaattctaggtaatttaaatgattcaattaaattattttcatt 43863572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 28181823 - 28181884
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  28181823 gaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 28181884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 21307111 - 21307197
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| ||| |||| |||||||||||||||||||  |  ||||| |||||||||||||||| ||||||||||    
T  21307111 agagtgtgtttggatgaggtaattgggaaa-ttttaaagaatttagaattttagataattgaaatgattcaattaaaatgctttcatt 21307197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 31188918 - 31188997
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattg 404  Q
    |||||||||||||| ||| || ||| |||||| |||||||||| ||||||||| ||  ||||||||||||||||||||||||    
T  31188918 taagagtgtgtttgaatgaaggatt-gagaaa-ttttaaagaaattagaattctaaacaattcaaatgattcaattaaattg 31188997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 6836590 - 6836646
Alignment:
Q  356 ttttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  | | ||||||||||||||||||||| ||||||||||    
T  6836590 ttttaaagaatttagaattttaggcaattcaaatgattcaattaaaatgctttcatt 6836646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 38506484 - 38506570
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||| ||| |||| ||| ||||||||||||||||||||||||  | | |||| |||||||||| ||||| || |||||||    
T  38506484 agagtgtgtttgaatgaagtaattg-gaaaattttaaagaatttagaattttaggcaatttaaatgattcatttaaaatgttttcatt 38506570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 48824659 - 48824720
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||||  | | |||| ||||||||||||||||||  |||||||    
T  48824659 gaaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattattttcatt 48824720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 46707139 - 46707079
Alignment:
Q  361 aagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    ||||||||||||||| ||| |||| |||| ||||||||||||| |||||||| || |||||    
T  46707139 aagaatttagaattctaagcaatttaaattattcaattaaattactttcatttttcaatac 46707079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 53129456 - 53129512
Alignment:
Q  356 ttttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||| |||||||||||| || | |||| |||||||||||||||||| ||||||||    
T  53129456 ttttaaggaatttagaatttaaggcaatttaaatgattcaattaaattactttcatt 53129512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 671188 - 671274
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| ||||||||||| || ||||  |   |||| |||||||||||||||||| ||||||||    
T  671188 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatataaaattatagacaatttaaatgattcaattaaattactttcatt 671274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 7977100 - 7977014
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| ||| |||| ||||||||||||| |||| | | | |||| ||||||||||||| |||| ||||||||    
T  7977100 agagtgtgtttggatgaggtaattgggaaa-ttttaaagaatttcgaatcctaggcaatttaaatgattcaattcaattactttcatt 7977014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 446
Target Start/End: Original strand, 13339116 - 13339206
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||||| ||||||||||||||  | | |||| ||||||||||||||||||  ||| ||| |||||     |||| ||||||||||||||||||    
T  13339116 gaaaattttgaagaatttagaattttaggcaatttaaatgattcaattaaattttttttatttttaaa-----tatttttgtttggatggagtaat 13339206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 34396148 - 34396230
Alignment:
Q  329 tgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||  ||| ||| |||||||||||||| |||| ||||| | | |||| ||||||||||||||||||  |||||||    
T  34396148 tgtgtttggatgaggtaattg-gaaaattttaaagagtttaaaattctaggcaatttaaatgattcaattaaattcttttcatt 34396230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Complemental strand, 46636343 - 46636304
Alignment:
Q  381 aattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  46636343 aattcaaatgattcaattaaattgcattcatttttaaata 46636304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 15760159 - 15760192
Alignment:
Q  379 gtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||||||||| |||||||    
T  15760159 gtaattcaaatgattcaattaaattgttttcatt 15760192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 28092187 - 28092127
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||| ||||| | | |||| | |||||||||||||||| ||||||||    
T  28092187 gaaaattttaaagaattta-aattctaggcaatttatatgattcaattaaatttctttcatt 28092127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 55460785 - 55460700
Alignment:
Q  356 ttttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    |||| ||||||||||||||  | | |||||||||| |||||||||||||| ||||||  ||||||   |||  ||||||||||||||||||    
T  55460785 tttttaagaatttagaattttaggcaattcaaatgtttcaattaaattgccttcattactaaata---tat--ttgtttggatggagtaat 55460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 321 - 446
Target Start/End: Original strand, 22303384 - 22303503
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||      
T  22303384 cctaagagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcttaaa-- 22303480  T
Q  421 cagtattattgtttggatggagtaat 446  Q
       |||||||||||||||||||||||    
T  22303481 ---tattattgtttggatggagtaat 22303503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 2840109 - 2840223
Alignment:
Q  213 ataaccaagtgctgtgttgcaaaagattcc-aaactcatcgatggtgtctctcactccgacgctgaaacatccgttgttgaaaattgcagctcgtcggaa 311  Q
    |||||||||||| ||||||| |||||| || ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||  || |||| |||||    
T  2840109 ataaccaagtgcggtgttgccaaagatccccaaactcatcgacggtgtctctcactccgacgccgaaacttccgttgttgagaatcacaactcgccggaa 2840208  T
Q  312 ggtcaataacctaag 326  Q
    |||||||||||||||    
T  2840209 ggtcaataacctaag 2840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 12480452 - 12480363
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||    
T  12480452 ctaagagtgtgtttggatgaggtaattg-gaaaattttaaagaatttagaattctaagcaatttaaatgattcaattaaattactttcatt 12480363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 10315196 - 10315105
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    ||||||||||||||| ||| |||||||| |||| ||||||||||||||  | | |||||||||||||||||| ||||||||||||||||||||    
T  10315196 agtgtgtttggatggggtaattgagaaa-ttttgaagaatttagaattatagggaattcaaatgattcaattcaattgctttcattcttaaat 10315105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 446
Target Start/End: Original strand, 37241163 - 37241274
Alignment:
Q  329 tgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtatta 428  Q
    ||||||||||||| ||| |||||||| |||| ||||||||||||||| |  |||||||||| |||||||||||||| |||||||  ||||     |||||    
T  37241163 tgtgtttggatggggtaattgagaaa-ttttgaagaatttagaattctagttaattcaaattattcaattaaattgttttcatttctaaa-----tatta 37241256  T
Q  429 ttgtttggatggagtaat 446  Q
    ||||||||||||||||||    
T  37241257 ttgtttggatggagtaat 37241274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 15270442 - 15270503
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||    
T  15270442 gaaaattttaaagaatttagaattctaggtaattgaaatgattcaattaaaatgctttcatt 15270503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 41761738 - 41761830
Alignment:
Q  319 aacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| ||||||||||||||||  ||| |||||||| |||||||||||||||||||  | | |||| |||||||||||||||||| ||||||||    
T  41761738 aaccttagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatt 41761830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 22304735 - 22304646
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| |||||||||||||  ||| |||||||| |||||||||||||||||||| |   |||| |||||||||||||||||| ||||||||    
T  22304735 ctaagtgtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctagacaatttaaatgattcaattaaattactttcatt 22304646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 6771822 - 6771909
Alignment:
Q  324 aagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||   || ||| | ||||||||||||||||||||||| | | |||||||||||||||||||||||  |||||||    
T  6771822 aagagtgtgtttggatgagttaattg-ggaaattttaaagaatttagaattctatgcaattcaaatgattcaattaaattattttcatt 6771909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 35111766 - 35111711
Alignment:
Q  319 aacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattc 375  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  35111766 aacctaagagtgtgtttggatggggtaattgag-aaattttaaagaatttagaattc 35111711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 28490456 - 28490369
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||| |   |||||||||||||| ||||||| | |||| |||||||||||||||||| ||||||||    
T  28490456 agagtgtgtttggatgaggtaattgaaatttttttaaagaatttaaaattcaaggcaatttaaatgattcaattaaattactttcatt 28490369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 408
Target Start/End: Original strand, 32249649 - 32249731
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    ||||||||||||||||  ||| ||  ||||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||    
T  32249649 agagtgtgtttggatgaggtaattt-gaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattacttt 32249731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 17541881 - 17541966
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    |||||||||||||||||||  ||| ||||| ||||||||||||||||||||| | |   |||| |||||||||||||||||| ||||    
T  17541881 ctaagagtgtgtttggatgaggtaattgag-aaattttaaagaatttagaatcctagacaatttaaatgattcaattaaattacttt 17541966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 412
Target Start/End: Complemental strand, 37091135 - 37091050
Alignment:
Q  326 gagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||  ||| ||| | |||| ||||||||||||||| || | |||||| |||||||||||||||||| ||||||||    
T  37091135 gagtgtgtttggatgaggtaattg-gtaaatcttaaagaatttagaactctaggtaattaaaatgattcaattaaattactttcatt 37091050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 927850 - 927764
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||| |||  ||| |||||||| |||||||||||||||||||| |   |||| |||||||| ||||||||| ||||||||    
T  927850 agagtgtgtttgaatgaggtaattgagaaa-ttttaaagaatttagaattctagacaatttaaatgatttaattaaattactttcatt 927764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 22304761 - 22304820
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||| | | | |||| |||||||||||||||||| ||||||||    
T  22304761 aaattttaaagaatttagaatcctaggcaatttaaatgattcaattaaattactttcatt 22304820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 33995444 - 33995530
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||| ||| |||||||||| ||||||||  | | ||||||||||||||||||||| ||||| ||||    
T  33995444 agagtgtgtttggatgatgtaattgacaaa-ttttaaagaaattagaattttaggcaattcaaatgattcaattaaaatgcttccatt 33995530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 28490009 - 28489925
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||  ||| || |||||||||||| ||||||||||| | | | |||| |||||||||||||||||| | ||||||    
T  28490009 agtgtgtttggatgaggtaatt-agaaaattttaaggaatttagaatcctaggcaatttaaatgattcaattaaattacgttcatt 28489925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 15579996 - 15580115
Alignment:
Q  323 taagagtgtgtttggatg-gagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    |||||||||||||||||| | ||| || || |||||||||| |||||| ||||| |   |||| |||||||||||||||||| ||||||||  | |||||    
T  15579996 taagagtgtgtttggatgagggtaatt-aggaaattttaaaaaatttaaaattctagacaatttaaatgattcaattaaattcctttcatttctcaatac 15580094  T
Q  422 agtattattgtttggatggagtaat 446  Q
        || ||||||||||||||||||    
T  15580095 ----tttttgtttggatggagtaat 15580115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 18443024 - 18442957
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    |||| ||| ||||||||||||||  | |||||||||| ||||||||||||||  |||||| |||||||    
T  18443024 aaatcttatagaatttagaattctgattaattcaaatcattcaattaaattgtcttcatttttaaata 18442957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 401
Target Start/End: Complemental strand, 14835338 - 14835265
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaa 401  Q
    |||||||||||||  |||| ||| |||| ||||||||||||||||| |  | |||||| ||||||||||||||||    
T  14835338 agtgtgtttggataaagtaattgggaaa-ttttaaagaatttagaagtttaggtaatttaaatgattcaattaaa 14835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 13390961 - 13391025
Alignment:
Q  324 aagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaat 389  Q
    |||||||||||||||||  ||| ||| |||| |||||||||||||||||||| ||| |||| ||||    
T  13390961 aagagtgtgtttggatgaggtaattgggaaa-ttttaaagaatttagaattctaagcaatttaaat 13391025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 33146632 - 33146544
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| ||||| |||||| ||||||||||||||   | | |||| |||| |||||||||| || ||||||||    
T  33146632 taagagtgtgtttggatgaggtagttgag-aaatttcaaagaatttagaatcttaggcaatttaaataattcaattaagttactttcatt 33146544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 31368363 - 31368315
Alignment:
Q  364 aatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||| ||  |||| |||||||||||||||||| ||||||||    
T  31368363 aatttagaattctaaacaatttaaatgattcaattaaatttctttcatt 31368315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 321 - 446
Target Start/End: Original strand, 7167184 - 7167303
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||      
T  7167184 cctaaaagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcttaaa-- 7167280  T
Q  421 cagtattattgtttggatggagtaat 446  Q
       |||||||||||||||||||||||    
T  7167281 ---tattattgtttggatggagtaat 7167303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 30698830 - 30698715
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||||     |    
T  30698830 agagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattttaggtaattcaaatgatttaattaaattgctttcattcttaaa-----t 30698737  T
Q  425 attattgtttggatggagtaat 446  Q
    |||||||||||||| |||||||    
T  30698736 attattgtttggatagagtaat 30698715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 327 - 441
Target Start/End: Original strand, 7611421 - 7611529
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtat 426  Q
    ||||||||||||||||||| |||||||| |||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||     |||    
T  7611421 agtgtgtttggatggagtaattgagaaa-ttttgaagaatttaaaattctaggtaattcaaatgattcaattaaattgctttcattcctaaa-----tat 7611514  T
Q  427 tattgtttggatgga 441  Q
    |||||||||||||||    
T  7611515 tattgtttggatgga 7611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 446
Target Start/End: Original strand, 32839184 - 32839303
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    ||||||||||||||| ||||  ||| |||||||| |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||| ||||      
T  32839184 cctaagagtgtgtttagatgaggtaattgagaaa-ttttaaagaatttaaaattctaggcaattcaaatgattcaattaaattgctttcattcataaa-- 32839280  T
Q  421 cagtattattgtttggatggagtaat 446  Q
       ||||||||||||||||| |||||    
T  32839281 ---tattattgtttggatggtgtaat 32839303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 7309436 - 7309522
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||    
T  7309436 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaagcaatttaaatgattcaattaaattactttcatt 7309522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 35047198 - 35047287
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||| ||||| | | |||| |||||||||||||||||| ||||||||    
T  35047198 ctaagagtgtgtttggatggggtaattgagaaa-ttttaaagaatttaaaattctaggcaatttaaatgattcaattaaattactttcatt 35047287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 769581 - 769495
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  769581 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 769495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 11595327 - 11595268
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||    
T  11595327 aaattttaaagaatttagaattctaagtaatttaaatgattcaattaaattactttcatt 11595268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 11607229 - 11607170
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||    
T  11607229 aaattttaaagaatttagaattctaagtaatttaaatgattcaattaaattactttcatt 11607170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 33188789 - 33188875
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  33188789 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 33188875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 446
Target Start/End: Complemental strand, 3092795 - 3092680
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| |||| |||  |||||||       
T  3092795 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggaaatttaaatgattcaattaaattacttttatttctaaatac--- 3092700  T
Q  425 attattgtttggatggagtaat 446  Q
      | ||||||||||||||||||    
T  3092699 --ttttgtttggatggagtaat 3092680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 7227615 - 7227675
Alignment:
Q  381 aattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  7227615 aattcaaatgattcaattaaattgctttcattcttaaa-----tattattgtttggatggagtaat 7227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 8735963 - 8736051
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| ||| |||| |||||||||||||||||| | ||| |||| |||||||||||||||||| ||||||||    
T  8735963 taagagtgtgtttggatgaggtaattgggaaa-ttttaaagaatttagaatcctaagcaatttaaatgattcaattaaattactttcatt 8736051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 1583332 - 1583418
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| ||||||||| |||||||| ||||||||    
T  1583332 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattccattaaattactttcatt 1583418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 13018298 - 13018208
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||  ||| |||||||| || ||||||||||| ||||| | |||||| |||| ||||||||||||| ||||||||    
T  13018298 cctaagagtgtgtttggatgaggtaattgagaaa-ttataaagaatttaaaattctaggtaatttaaataattcaattaaattactttcatt 13018208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 419
Target Start/End: Original strand, 32839714 - 32839808
Alignment:
Q  324 aagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    |||||| ||||||| ||| ||| |||||||| |||| ||||||||||||||| |   |||||||||||||||||| ||||||||| ||||||||||    
T  32839714 aagagtttgtttgggtggggtaattgagaaa-ttttgaagaatttagaattctagagaattcaaatgattcaattcaattgctttaattcttaaat 32839808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 44256183 - 44256097
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| ||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  44256183 agagtatgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 44256097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 14306362 - 14306450
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| |||||||| |||||||||||||||||||| |   |||| ||||| |||||||||| ||||||||||    
T  14306362 taagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctagacaattaaaatggttcaattaaaatgctttcatt 14306450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 2925200 - 2925114
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||| |||| ||| |||| |||||||||||||||||||| | | |||| |||||||||| ||||| || |||||||    
T  2925200 agagtgtgtttggatgaagtaattgggaaa-ttttaaagaatttagaattctaggcaatttaaatgattcatttaaaatgttttcatt 2925114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 19231017 - 19231102
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||| ||||||| | | |||| |||||||||||||||||| ||||||||    
T  19231017 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatt-agaattctaggcaatttaaatgattcaattaaattactttcatt 19231102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 30265853 - 30265802
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattg 404  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  30265853 aaattttaaagaatttagaattctaagcaattcaaatgattaaattaaattg 30265802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 39630775 - 39630689
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| ||||||| |||||| ||||| | | |||| |||||||||||||||||| ||||||||    
T  39630775 agagtgtgtttggatgaggtaattgagaaa-ttttaaaaaatttaaaattctaggcaatttaaatgattcaattaaattactttcatt 39630689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 28021704 - 28021788
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    ||||||||||||||||||   || |||||||| ||||||||||||||||||||     ||||||||||||||||||||| ||||||    
T  28021704 taagagtgtgtttggatgagctaattgagaaa-ttttaaagaatttagaattcttgacaattcaaatgattcaattaaaatgcttt 28021788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 21505003 - 21504913
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| ||||||||||||||  ||| ||| |||| |||||||||||||||||||| ||| |||| ||||| || ||||||||| ||| ||||    
T  21505003 cctaaaagtgtgtttggatgaggtaattgggaaa-ttttaaagaatttagaattctaagcaatttaaatgttttaattaaattacttgcatt 21504913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 45094045 - 45094117
Alignment:
Q  369 agaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||| | |||||||||||||||||||| ||| |||||||||| ||||     |||||||||||||||| ||||||    
T  45094045 agaattctaggtaattcaaatgattcaattcaatcgctttcattcctaaa-----tattattgtttggatgaagtaat 45094117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 19072380 - 19072305
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaa 401  Q
    ||||||||||||||||   || |||||||| |||||||||||||||||| | | |||||| ||||||||||| ||||    
T  19072380 agagtgtgtttggatgagataattgagaaa-ttttaaagaatttagaatcctaggtaatttaaatgattcaagtaaa 19072305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 17906191 - 17906105
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||| |||||| ||||||||||| ||||  |  ||||| |||| ||||||||||||| ||||||||    
T  17906191 agagtgtgtttggatgaggtaattga-aaaattataaagaatttaaaattatagataatttaaataattcaattaaattactttcatt 17906105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 404
Target Start/End: Original strand, 31703923 - 31704001
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattg 404  Q
    |||||||||||| |||  ||| ||| |||||||||| | |||||||||||| |   ||||||||||||||||||||||||    
T  31703923 agagtgtgtttgaatgaggtaattg-gaaaattttagataatttagaattctagtcaattcaaatgattcaattaaattg 31704001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 11141852 - 11141768
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||  ||| |||||||| |||||||||||||||||| | |   |||| ||||||||| ||||||||  |||||||    
T  11141852 agtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaatcctagacaatttaaatgattccattaaattaatttcatt 11141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 24051824 - 24051706
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||       
T  24051824 ctaagagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcatttttaaa--- 24051729  T
Q  422 agtattattgtttggatggagtaat 446  Q
      |||||||||||||||||||||||    
T  24051728 --tattattgtttggatggagtaat 24051706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 327 - 446
Target Start/End: Complemental strand, 24045511 - 24045398
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtat 426  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||     |||    
T  24045511 agtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcttaaa-----tat 24045418  T
Q  427 tattgtttggatggagtaat 446  Q
    ||||||||||||||||||||    
T  24045417 tattgtttggatggagtaat 24045398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 28324221 - 28324338
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||        
T  28324221 taagagtgtgtttggatggagtatttgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgttttcattcttaaa---- 28324315  T
Q  423 gtattattgtttggatggagtaat 446  Q
     ||||||| |||||||||||||||    
T  28324316 -tattattttttggatggagtaat 28324338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 419
Target Start/End: Original strand, 36624810 - 36624903
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    ||||||||||| |||||  || |||||||| |||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  36624810 agagtgtgtttagatgggataattgagaaa-ttttgaagaatttagaattctaaggaattcaaatgattcaattcaattgctttcattcttaaat 36624903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 444
Target Start/End: Complemental strand, 44890150 - 44890034
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    ||||||||||||||||||   ||| |||||||| ||| ||| |||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||       
T  44890150 ctaagagtgtgtttggataaggtaattgagaaattttgaaa-aatttagaattctaggtaattcaaattattaaattaaattgctttcattcttaaa--- 44890055  T
Q  422 agtattattgtttggatggagta 444  Q
      |||||||||||||||||||||    
T  44890054 --tattattgtttggatggagta 44890034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 420
Target Start/End: Complemental strand, 9983200 - 9983103
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    |||||||||||||||||||  ||| |||||||| |||| ||||||||||||||| ||  |||||||||||||||||| ||||| ||||||| |||||||    
T  9983200 ctaagagtgtgtttggatgaggtaattgagaaa-ttttgaagaatttagaattctaatcaattcaaatgattcaattgaattgatttcatttttaaata 9983103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 44346218 - 44346307
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  44346218 ctaagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 44346307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 29611876 - 29611786
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||  | | |||| |||||||||||||||||| ||||||||    
T  29611876 cctaagagtgtgtttggatgtggtaattg-gaaaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatt 29611786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 33376829 - 33376915
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||| ||| |||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||    
T  33376829 agagtgtgtttggatgaggtaattgataaa-ttttaaagaatttagaattctaggtaatttaaatgattcaattaaattactttcatt 33376915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 31980047 - 31980132
Alignment:
Q  326 gagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  31980047 gagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 31980132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 29256911 - 29256999
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||| |  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  29256911 taagagtgtgtttggacgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 29256999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 29482339 - 29482427
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| |||||||| |||||||||||||||||||  | | |||| |||||||||||||||||| ||||||||    
T  29482339 taagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattataggaaatttaaatgattcaattaaattactttcatt 29482427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 14787 - 14701
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  | | |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  14787 agagtgtgtttggatgaggaaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 14701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 43185529 - 43185443
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| |   |||| |||||||||||||||||| ||||||||    
T  43185529 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctagacaatttaaatgattcaattaaattactttcatt 43185443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 31976666 - 31976751
Alignment:
Q  326 gagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||| ||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  31976666 gagtgtttttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 31976751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 33986552 - 33986460
Alignment:
Q  319 aacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| ||||||||||||||||  ||| |||||||| ||||||||||||  |||||| | | |||| |||||||||||||||||| ||||||||    
T  33986552 aaccttagagtgtgtttggatgaggtaattgagaaa-ttttaaagaattcggaattctaggcaatttaaatgattcaattaaattactttcatt 33986460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 31976153 - 31976200
Alignment:
Q  361 aagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  31976153 aagaatttagaattctaggtaattcaaatgattcaattaaattgcttt 31976200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 8049724 - 8049640
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||  ||| |||| ||  |||||||||||||||| ||| | ||||||||||||||||||||||| || |||||||    
T  8049724 agtgtgtttggatgaggtaattga-aattttttaaagaatttagagttctatgtaattcaaatgattcaattaaaatgttttcatt 8049640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 35978590 - 35978678
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  | | |||||||| |||||||||||||| ||||| |   |||| |||||||||||||||||| ||||||||    
T  35978590 taagagtgtgtttggatgaggcaattgagaaa-ttttaaagaatttaaaattctagtcaatttaaatgattcaattaaattcctttcatt 35978678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 412
Target Start/End: Original strand, 40733641 - 40733721
Alignment:
Q  331 tgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||  ||| |||||||| |||||||||||||| ||||| | | |||| |||||||||||||||||| ||||||||    
T  40733641 tgtttggatgaggtaattgagaaa-ttttaaagaatttaaaattctaggcaatttaaatgattcaattaaattactttcatt 40733721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 446
Target Start/End: Complemental strand, 10593620 - 10593507
Alignment:
Q  326 gagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagta 425  Q
    |||||||||||||||  ||| |||||||| ||||||| |||||| ||||| | | |||| |||||||||||||||||| |||||||| || |||||        
T  10593620 gagtgtgtttggatgaggtaattgagaaa-ttttaaa-aatttaaaattctaggcaatttaaatgattcaattaaattactttcattttttaatac---- 10593527  T
Q  426 ttattgtttggatggagtaat 446  Q
     | ||||||||||||||||||    
T  10593526 -ttttgtttggatggagtaat 10593507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 446
Target Start/End: Original strand, 1087873 - 1087961
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||||||||||||||||||  | | |||| |||||||||||||||||| |||| |||  |||||||     | ||||||||||||||||||    
T  1087873 aaattttaaagaatttagaattttaggaaatttaaatgattcaattaaattacttttatttctaaatac-----ttttgtttggatggagtaat 1087961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 26519984 - 26520068
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||  |||| |||| ||| |||||||||||||| ||||| | | |||| |||||||||||||||| | ||||||||    
T  26519984 agtgtgtttggataaagtaattgataaa-ttttaaagaatttaaaattctaggcaatttaaatgattcaattaaactactttcatt 26520068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 34009240 - 34009152
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| ||||| |||||| ||||||||||||||   | | |||| |||| |||||||||| || ||||||||    
T  34009240 taagagtgtgtttggatgaggtagttgag-aaatttcaaagaatttagaatcttaggcaatttaaataattcaattaagttactttcatt 34009152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 35404339 - 35404380
Alignment:
Q  379 gtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    ||||||||||| |||||||||||||| ||||||| |||||||    
T  35404339 gtaattcaaatcattcaattaaattgatttcatttttaaata 35404380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 8469921 - 8469885
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaat 389  Q
    ||||||||||||||||||||||| | |||||||||||    
T  8469921 aaattttaaagaatttagaattctaggtaattcaaat 8469885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 28190256 - 28190308
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaatt 403  Q
    |||||||| |||||| ||||||||| | | |||| ||||||||||||||||||    
T  28190256 gaaaatttgaaagaacttagaattctacgcaatttaaatgattcaattaaatt 28190308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 4018 - 4135
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    |||||||||||||||||||||||||||| ||  |||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||        
T  4018 taagagtgtgtttggatggagtatttga-aattttttgaagaatttagaattctaggttattcaaatgattcaattaaattgctttcattcttaaa---- 4112  T
Q  423 gtattattgtttggatggagtaat 446  Q
     |||||||||||||||||||||||    
T  4113 -tattattgtttggatggagtaat 4135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 4662 - 4779
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    |||||||||||||||||||||||||||| ||  |||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||        
T  4662 taagagtgtgtttggatggagtatttga-aattttttgaagaatttagaattctaggttattcaaatgattcaattaaattgctttcattcttaaa---- 4756  T
Q  423 gtattattgtttggatggagtaat 446  Q
     |||||||||||||||||||||||    
T  4757 -tattattgtttggatggagtaat 4779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 328 - 442
Target Start/End: Complemental strand, 44571224 - 44571116
Alignment:
Q  328 gtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtatt 427  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||     ||||    
T  44571224 gtgtgtttggatggagtatttgagaaa-ttttgaagaatttaaaattctaggtaattcaaatgattcaattaaattgctttcattcttaaa-----tatt 44571131  T
Q  428 attgtttggatggag 442  Q
    |||||||||||||||    
T  44571130 attgtttggatggag 44571116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 37447426 - 37447541
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||||| | |||||| ||||||||||||||||||||||| |||||||||     |    
T  37447426 agagtgtgtttggatgaagtatttgagaaa-ttttgaagaatttagaattctaggtaatttaaatgattcaattaaattgcttttattcttaaa-----t 37447519  T
Q  425 attattgtttggatggagtaat 446  Q
    |||||| |||||||||||||||    
T  37447520 attattatttggatggagtaat 37447541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 39887615 - 39887504
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||| ||||     |    
T  39887615 agagtgtgtttggatggagtaattgagaaa-ttttgaagaatttagaattttaggtaattcaaatgattcaattaaattgctttcattcctaaa-----t 39887522  T
Q  425 attattgtttggatggag 442  Q
    ||||||||||||||||||    
T  39887521 attattgtttggatggag 39887504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 51854274 - 51854160
Alignment:
Q  213 ataaccaagtgctgtgttgcaaaagattcc-aaactcatcgatggtgtctctcactccgacgctgaaacatccgttgttgaaaattgcagctcgtcggaa 311  Q
    |||||||||||| ||||||| |||||| || |||||||||||  ||||||||||||||||||| ||||| ||||||||||| ||| ||| |||| |||||    
T  51854274 ataaccaagtgcggtgttgccaaagatccccaaactcatcgacagtgtctctcactccgacgccgaaacttccgttgttgagaatcgcaactcgccggaa 51854175  T
Q  312 ggtcaataacctaag 326  Q
    |||||||||||||||    
T  51854174 ggtcaataacctaag 51854160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 37036504 - 37036619
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||| ||| || ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||     |    
T  37036504 agagtgtgtttggatggggtaattaagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgctttcattcctaaa-----t 37036597  T
Q  425 attattgtttggatggagtaat 446  Q
    ||||||||||||||||| ||||    
T  37036598 attattgtttggatggaataat 37036619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 37446883 - 37446998
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||| ||| || ||||| |||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||     |    
T  37446883 agagtgtgtttggatggggtaattaagaaa-ttttgaagaatttataattctaggtaattcaaatgattcaattaaattgctttcattcctaaa-----t 37446976  T
Q  425 attattgtttggatggagtaat 446  Q
    ||||||||||||||||||||||    
T  37446977 attattgtttggatggagtaat 37446998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 8225324 - 8225211
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||  | ||||||||||||| ||||||||||||||||||||| | ||        
T  8225324 taagagtgtgtttggatggagtaattgagaaa-ttttgaagaatttagaattttaggtaattcaaatgaatcaattaaattgctttcattccttaa---- 8225230  T
Q  423 gtattattgtttggatggag 442  Q
     |||||||||||||||||||    
T  8225229 -tattattgtttggatggag 8225211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 15467476 - 15467572
Alignment:
Q  315 caataacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| ||||||||||||||||||||  ||| || ||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  15467476 caatatcctaagagtgtgtttggatgaggtaattaagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 15467572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 41822752 - 41822831
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgc 405  Q
    ||||||||||||| |||||||||| ||||| |||| ||||||||||||||  | |||||||||||||||||||||||||||    
T  41822752 agagtgtgtttgggtggagtatttaagaaa-ttttgaagaatttagaattataggtaattcaaatgattcaattaaattgc 41822831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 946929 - 946843
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  946929 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 946843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 412
Target Start/End: Complemental strand, 35499602 - 35499512
Alignment:
Q  321 cctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||| |||| ||  ||||||||||||||||||||||||| |  ||||| |||||||||||||||||| | ||||||    
T  35499602 cctaagagtgtgtttggatgaagtaattt-gaaaattttaaagaatttagaattctagataatttaaatgattcaattaaattacattcatt 35499512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 6470225 - 6470315
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||| | |||||| |||||||| |||||||||  |||||||    
T  6470225 ctaagagtgtgtttggatgaggcaattgagaaatttttaaagaatttagaattctaggtaatttaaatgatttaattaaattattttcatt 6470315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 412
Target Start/End: Original strand, 21267340 - 21267432
Alignment:
Q  319 aacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||   || |||||||| ||||||||||||| |||||  | | |||| | |||||||||||||||| ||||||||    
T  21267340 aacctaagagtgtgtttggatgagataattgagaaa-ttttaaagaatttcgaattataggcaatttagatgattcaattaaattactttcatt 21267432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 32647815 - 32647727
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||||||||||||||||||| |   |||| |||||||||||||||||| ||||||||  |||||||     | ||||||||||||||||||    
T  32647815 aaattttaaagaatttagaattctagaaaatttaaatgattcaattaaattactttcatttctaaatac-----ttttgtttggatggagtaat 32647727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 28632126 - 28632212
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||   || |||||||| || |||| |||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  28632126 agagtgtgtttggatgagataattgagaaa-ttataaaaaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 28632212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 220704 - 220627
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaa 401  Q
    ||||||||||||||||||  ||| |||| |||||| || |||||||||||||| | | |||| ||||||||||||||||    
T  220704 taagagtgtgtttggatgaggtaattga-aaaattatagagaatttagaattctaggcaatttaaatgattcaattaaa 220627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 412
Target Start/End: Original strand, 41822078 - 41822159
Alignment:
Q  330 gtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||| |||| |||||||| ||||| |||||||||||||| | | |||| |||| ||||| ||||| ||||||||||    
T  41822078 gtgtttggatgaagtaattgagaaa-ttttacagaatttagaattctaggcaatttaaataattcatttaaaatgctttcatt 41822159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 50472238 - 50472150
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||||||||||||||||||  | | |||| |||| ||||||||||||| |||||||| || |||||     | ||||||||||||||||||    
T  50472238 aaattttaaagaatttagaattttaggcaatttaaattattcaattaaattactttcatttttcaatac-----ttttgtttggatggagtaat 50472150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 401
Target Start/End: Complemental strand, 10167017 - 10166969
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaa 401  Q
    ||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  10167017 aaattttaaagaatttaaaattctaggcaattcaaatgattcaattaaa 10166969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 37447971 - 37448038
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgatt 393  Q
    ||||||||||||||||| ||| ||||| ||||||| | ||||||||||||| | | |||||||||||||    
T  37447971 agagtgtgtttggatggggtaattgag-aaattttgatgaatttagaattctagggaattcaaatgatt 37448038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 32128636 - 32128551
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    ||||||||||||||| | |  ||| |||||||| |||||||||||||| ||||  | ||||||  ||||||||||||||||| ||||    
T  32128636 ctaagagtgtgtttgaacgaggtaattgagaaa-ttttaaagaatttaaaattttaggtaattttaatgattcaattaaattccttt 32128551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 32202261 - 32202215
Alignment:
Q  366 tttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||  |||||||| |||||||||||||||||| ||||||||    
T  32202261 tttagaattttaagtaatttaaatgattcaattaaattactttcatt 32202215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 4663861 - 4663774
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||| ||||||||||  ||| |||| ||| |||||| ||||||| ||||| ||| | ||||||| ||||||||||| ||||||||||    
T  4663861 taagagtttgtttggatgaggtaattgacaaa-ttttaaggaatttaaaattctaagca-ttcaaattattcaattaaaatgctttcatt 4663774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 41442601 - 41442718
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    ||||||||||||||||| | ||| |||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||        
T  41442601 taagagtgtgtttggattgggtaattgagaaa-ttttgaagaatttagaattctaggtaattcaaatgattcaattaaattgccttcattcctaaa---- 41442695  T
Q  423 gtattattgtttggatggagtaat 446  Q
     |||||||||||||||||||||||    
T  41442696 -tattattgtttggatggagtaat 41442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 18479143 - 18479235
Alignment:
Q  177 caagtccatcaagagatctgtatcaagaataaaataataaccaagtgctgtgttgcaaaagat-tccaaactcatcgatggtgtctctcactc 268  Q
    |||||||||||| | |||||||||||||| || ||||||||||||||| |||||||  |||||  ||||||||||||||||||||||||||||    
T  18479143 caagtccatcaacaaatctgtatcaagaagaagataataaccaagtgcggtgttgcccaagatccccaaactcatcgatggtgtctctcactc 18479235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 23548117 - 23548234
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    ||||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||  |||||||     
T  23548117 taagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggaaatttaaatgattcaattaaattactttcatttctaaatac- 23548214  T
Q  423 gtattattgtttggatggagtaat 446  Q
        | ||||||||||||||||||    
T  23548215 ----ttttgtttggatggagtaat 23548234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 45984885 - 45984797
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||| ||| | |||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  45984885 taagagtgtgtttggatggggtaatagagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 45984797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 45989245 - 45989157
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||| ||| | |||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  45989245 taagagtgtgtttggatggggtaatagagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 45989157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 13814504 - 13814595
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    |||||||||| || | ||| |||||||| |||| ||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||    
T  13814504 agtgtgtttgaatagggtaattgagaaa-ttttgaagaatttagaattctagggaattcaaatgattcaattcaattgctttcattcttaaat 13814595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 39342160 - 39342246
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  39342160 agagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 39342246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 40495749 - 40495656
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    ||||||||||||||||  ||| |||||||| |||| ||||||||||||||  | | |||||||||||||||||| ||||| ||||||||||||||    
T  40495749 agagtgtgtttggatgaggtaattgagaaa-ttttgaagaatttagaattatagggaattcaaatgattcaattcaattgttttcattcttaaat 40495656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 28538675 - 28538763
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| |||||||| |||||||||||||||||||  | | |||| |||||||||||||||||| ||||||||    
T  28538675 taagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatt 28538763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 36328326 - 36328414
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| |||||||| ||||||| |||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  36328326 taagagtgtgtttggatgaggtaattgagaaa-ttttaaaaaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 36328414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 2411861 - 2411775
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||| |||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  2411861 agagagtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 2411775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 14602771 - 14602857
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||| |||||||||||||||||||||||| | | |||| |||| ||||||||||||| ||||||||    
T  14602771 agagtgtgtttggatgaggtaattga-aaaattttaaagaatttagaattctaggcaatttaaataattcaattaaattactttcatt 14602857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 35456356 - 35456268
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| |||| ||| |||||||||||||||||||| | | |||| |||| ||||||||||||| ||||||||    
T  35456356 taagagtgtgtttggatgaggtaattga-aaatttttaaagaatttagaattctaggcaatttaaataattcaattaaattactttcatt 35456268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 42817074 - 42816986
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||| |||||  ||| |||||||| |||||||||||||||||||| | | |||| ||||||||||||| |||| ||||||||    
T  42817074 taagagtgtgttaggatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattgaattactttcatt 42816986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 43791573 - 43791485
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| ||| |||||||||||||||||||||||||   | |||| ||||||||||||||||||  |||||||    
T  43791573 taagagtgtgtttggatgaggtaattg-gaaaattttaaagaatttagaattcttggcaatttaaatgattcaattaaattattttcatt 43791485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 18484235 - 18484297
Alignment:
Q  264 cactccgacgctgaaacatccgttgttgaaaattgcagctcgtcggaaggtcaataacctaag 326  Q
    ||||||||||| ||||| ||||||||||| ||| ||| |||| ||||||||||||||||||||    
T  18484235 cactccgacgccgaaacttccgttgttgagaatcgcaactcgccggaaggtcaataacctaag 18484297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 38320825 - 38320734
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    ||||||||||||||  ||| ||||  ||||||||||||||||| ||||| | | |||||||||||| |||||||||||  |||||| |||||||    
T  38320825 agtgtgtttggatgtggtaattga--aaattttaaagaatttaaaattctaggcaattcaaatgatacaattaaattgtcttcatttttaaata 38320734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 30080335 - 30080390
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    ||||||| ||||||||||||||| ||| |||| |||||||||||||||||| ||||    
T  30080335 aaattttgaagaatttagaattctaagcaatttaaatgattcaattaaattacttt 30080390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 40496241 - 40496182
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||| ||||| | | |||| |||||||||||||||||| ||||||||    
T  40496241 aaattttaaagaatttataattctaggcaatttaaatgattcaattaaattactttcatt 40496182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 30587455 - 30587516
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||| |||||||||||||| | | |||| ||| |||||||||||||| ||||||||    
T  30587455 gaaaattttagagaatttagaattctaggcaatttaaaagattcaattaaattactttcatt 30587516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 446
Target Start/End: Original strand, 46699774 - 46699862
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatggagtaat 446  Q
    ||||||| ||||||||||||||  | | ||||||||| ||||||||||||| | ||||||  ||||     |||||||||||||||||||||||    
T  46699774 aaattttgaagaatttagaattttatgcaattcaaattattcaattaaattaccttcatttctaaa-----tattattgtttggatggagtaat 46699862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 14790620 - 14790570
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaat 373  Q
    |||||||||||||||||||  ||| ||| |||||||||||||||||||||||    
T  14790620 ctaagagtgtgtttggatgaggtaattg-gaaaattttaaagaatttagaat 14790570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 45181754 - 45181842
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  ||| ||  |||||||||| ||| |||||||||| | | |||| |||| |||||||||| |||| ||||||    
T  45181754 ctaagagtgtgtttggatgaggtaatt--gaaaattttagagagtttagaattctaggcaattgaaattattcaattaatttgccttcatt 45181842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 421
Target Start/End: Complemental strand, 26416471 - 26416375
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    |||||||||||||| |||  ||| |||||||| |||| ||||||||||||||| | | |||  |||| ||||||||||||| |||||||| || |||||    
T  26416471 taagagtgtgtttg-atgaggtaattgagaaa-ttttgaagaatttagaattctaggcaatctaaataattcaattaaattactttcattttttaatac 26416375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 408
Target Start/End: Original strand, 9784455 - 9784536
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgcttt 408  Q
    |||||||||||| | |||| |||||||| ||| |||||||||| ||||  | | |||| | |||||||||||||||| ||||    
T  9784455 agtgtgtttggacgaagtaattgagaaattttaaaagaatttaaaattttaggcaatttagatgattcaattaaattacttt 9784536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 6980816 - 6980930
Alignment:
Q  213 ataaccaagtgctgtgttgcaaaagattcc-aaactcatcgatggtgtctctcactccgacgctgaaacatccgttgttgaaaattgcagctcgtcggaa 311  Q
    |||||||||||| ||||||| |||||| || |||||||||||||| |||||||||||||| || ||||| ||||||||||| ||| ||| |||| |||||    
T  6980816 ataaccaagtgcggtgttgccaaagatccccaaactcatcgatggcgtctctcactccgatgccgaaacttccgttgttgagaatcgcaactcgccggaa 6980915  T
Q  312 ggtcaataacctaag 326  Q
    |||||||||||||||    
T  6980916 ggtcaataacctaag 6980930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 54566722 - 54566629
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    ||||||||||||||||| ||| |||||||| |||||| ||||||| ||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  54566722 agagtgtgtttggatggggtaattgagaaa-ttttaatgaatttaaaattcaagggaattcaaatgattcaattcaattgctttcattcttaaat 54566629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 2126389 - 2126300
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  2126389 ctaagagtgtgtttggatggggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 2126300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 446
Target Start/End: Original strand, 42775775 - 42775895
Alignment:
Q  320 acctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||  |||||    
T  42775775 acctaagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagaattctaggaaatttaaatgattcaattaaattactttcatttctaaat 42775873  T
Q  420 acagtattattgtttggatggagtaat 446  Q
    ||     | ||||||||||||||||||    
T  42775874 ac-----ttttgtttggatggagtaat 42775895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 24705878 - 24705785
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    ||||||||||||||||| ||| |||| |||||||| ||||||||||||||  | | |||||||||||||||||| ||||||||||||| ||||||    
T  24705878 agagtgtgtttggatggggtaattga-aaaattttgaagaatttagaattttagggaattcaaatgattcaattcaattgctttcatttttaaat 24705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 412
Target Start/End: Complemental strand, 35470675 - 35470586
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  35470675 ctaagagtgtgtttggatgatgtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 35470586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 47108777 - 47108682
Alignment:
Q  316 aataacctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||| ||||| |||||||||||||  ||| ||| ||||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  47108777 aataaactaagtgtgtgtttggatgaggtaattg-gaaaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 47108682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 40547766 - 40547854
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| |||||||| |||||||||||||| ||||| | | |||| |||||||||||||||||| ||||||||    
T  40547766 taagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttaaaattctaggcaatttaaatgattcaattaaattactttcatt 40547854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 41140020 - 41139934
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||| | |||| |||||||| |||||||||||||| ||||| ||| |||| ||||||||||||||||||  |||||||    
T  41140020 agagtgtgtttggaagaagtaattgagaaa-ttttaaagaatttaaaattctaagcaatttaaatgattcaattaaattattttcatt 41139934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 446
Target Start/End: Original strand, 46242622 - 46242737
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagt 424  Q
    ||||||||||||||||  ||| ||| |||| |||||||||||||| ||||| ||| |||| |||||||| ||||||||| |||||||| ||     || |    
T  46242622 agagtgtgtttggatgaggtaattgggaaa-ttttaaagaatttataattctaagcaatttaaatgattgaattaaattactttcattttt-----caat 46242715  T
Q  425 attattgtttggatggagtaat 446  Q
    ||| ||||||||||||||||||    
T  46242716 atttttgtttggatggagtaat 46242737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 26535009 - 26534941
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatac 421  Q
    ||||||||||||||||||||||| | | |||| |||||||||||||||||| |||||||| || |||||    
T  26535009 aaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatttttcaatac 26534941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 328 - 412
Target Start/End: Complemental strand, 42776630 - 42776547
Alignment:
Q  328 gtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||  ||| ||| ||||||||||||||||||||||| | ||| |||| ||||||||||||| |||| ||||||||    
T  42776630 gtgtgtttggatgaggtaattg-gaaaattttaaagaatttagaatcctaagcaatttaaatgattcaattcaattactttcatt 42776547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 16516718 - 16516644
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaatt 398  Q
    ||||||||||||||||||  ||| |||||||| |||| |||||||||||||||   ||||||||||||||||||||    
T  16516718 taagagtgtgtttggatgaggtaattgagaaa-ttttgaagaatttagaattcttggtaattcaaatgattcaatt 16516644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 446
Target Start/End: Complemental strand, 30303670 - 30303553
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaataca 422  Q
    ||||||||||||||||||   || |||||||| |||||||||||||| ||||| | | ||||||||||||||||||||| | | ||||||  ||||        
T  30303670 taagagtgtgtttggatgagataattgagaaa-ttttaaagaatttaaaattctaggcaattcaaatgattcaattaaactaccttcatttctaaa---- 30303576  T
Q  423 gtattattgtttggatggagtaat 446  Q
     |||| ||||||||||||||||||    
T  30303575 -tatttttgtttggatggagtaat 30303553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 13318216 - 13318300
Alignment:
Q  326 gagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||  |||||||||||| |||||||||||||||| || |  | |||| |||||||||||||||||| ||||||||    
T  13318216 gagtgtgtttggatgatgtatttgagaaa-ttttaaagaatttagattttatgg-aatttaaatgattcaattaaattactttcatt 13318300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 21782523 - 21782435
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||  ||| ||| |||| |||||||||||||||||||| |   |||||||||||||| |||||| | ||||||||    
T  21782523 taagagtgtgtttggatgaggtaattgtgaaa-ttttaaagaatttagaattctagacaattcaaatgattccattaaaatactttcatt 21782435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 27284245 - 27284306
Alignment:
Q  351 gaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||||| | | |||| ||||| |||||||||||| ||||||||    
T  27284245 gaaaattttaaagaatttagaattctaggcaatttaaatggttcaattaaattactttcatt 27284306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 17727564 - 17727508
Alignment:
Q  356 ttttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||| |  |||||| |||||||||||||||||| ||||||||    
T  17727564 ttttaaagaatttagaatttagggtaatttaaatgattcaattaaattactttcatt 17727508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 46242194 - 46242250
Alignment:
Q  354 aattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttca 410  Q
    |||||| ||||||||||||||| |  ||||| |||||||||||||||||||||||||    
T  46242194 aattttgaagaatttagaattctagataatttaaatgattcaattaaattgctttca 46242250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 28751744 - 28751830
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||   || |||||||| ||||||| |||||||||||  | | |||| |||||||||||||||||| ||||||||    
T  28751744 agagtgtgtttggatgagataattgagaaa-ttttaaaaaatttagaattataggcaatttaaatgattcaattaaattactttcatt 28751830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 29091676 - 29091606
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgatt 393  Q
    |||||||||||||||||| | ||||||||| ||||||| || |||||||||||| | | |||||||||||||    
T  29091676 ctaagagtgtgtttggatagggtatttgag-aaattttgaaaaatttagaattctagggaattcaaatgatt 29091606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 5579675 - 5579737
Alignment:
Q  350 agaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||| ||||||||| ||||| ||  |||| |||||||||||||||||| ||||||||    
T  5579675 agaaaattttgaagaatttaaaattccaaacaatttaaatgattcaattaaattcctttcatt 5579737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 17727929 - 17727881
Alignment:
Q  356 ttttaaagaatttagaattcaaagtaattcaaatgattcaattaaattg 404  Q
    |||| ||||||||||||||| ||| ||||||||| ||||||||||||||    
T  17727929 ttttgaagaatttagaattctaagcaattcaaattattcaattaaattg 17727881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 53760322 - 53760373
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattc 375  Q
    ||||| ||||||||||||||||| ||||| ||||||| ||||||||| |||||    
T  53760322 taagattgtgtttggatggagtaattgag-aaattttgaagaatttataattc 53760373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 56339608 - 56339549
Alignment:
Q  333 tttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgatt 393  Q
    |||||| |||||| |||||||| |||| ||||||||||||||  | |||||||||||||||    
T  56339608 tttggagggagtaattgagaaa-ttttgaagaatttagaattataggtaattcaaatgatt 56339549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 15833154 - 15833062
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaata 420  Q
    ||||||||||||||||||| |||||||| |||| ||||||| ||||||  | ||||||||||||||| ||||||||||||||||||||||||||    
T  15833154 agtgtgtttggatggagtaattgagaaa-ttttgaagaattcagaattttaggtaattcaaatgatttaattaaattgctttcattcttaaata 15833062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 31413412 - 31413316
Alignment:
Q  322 ctaagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaat 419  Q
    |||| ||||||||||||||| ||| |||||||| |||| ||||||||||||||| | | ||||||||||||| |||| | ||||||| ||||||||||    
T  31413412 ctaaaagtgtgtttggatggggtaattgagaaa-ttttgaagaatttagaattctagggaattcaaatgattaaattcagttgctttaattcttaaat 31413316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 8475678 - 8475592
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||| ||||  ||| |||||||| |||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  8475678 agagtgtgtttagatgaggtaattgagaaa-ttttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 8475592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 1369027 - 1368939
Alignment:
Q  323 taagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||| |  ||| |||||||| || ||||||||||| ||||| | |||||| |||||||||||||||||| ||||||||    
T  1369027 taagagtgtgtttggacgaggtaattgagaaa-ttataaagaatttaaaattctaggtaatttaaatgattcaattaaattactttcatt 1368939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 724811 - 724897
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||||||  |||||| ||||||||||||| | ||||||||||||||| ||| ||| ||||||||||    
T  724811 agagtgtgtttggatgaggtaattgagaattttttaa-gaatttagaattctaggtaattcaaatgattaaatgaaaatgctttcatt 724897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 9697937 - 9697889
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaatt 374  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  9697937 agagtgtgtttggatggagtaattgag-aaattttaaagaatttagaatt 9697889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 10105556 - 10105469
Alignment:
Q  324 aagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||||  ||| |||||||| |||||||||||||||| ||  | | ||||| ||||||||||||||| || |||||||    
T  10105556 aagagtgtgtttggatgaggtaattgagaaa-ttttaaagaatttagacttgtaggcaattccaatgattcaattaaaatgatttcatt 10105469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 6357852 - 6357911
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||| ||||||||||||||  |||||||| ||||||||||||||||||  |||||||    
T  6357852 aaattttgaagaatttagaattttaagtaatttaaatgattcaattaaattattttcatt 6357911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 15615920 - 15616006
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||  ||| |||| ||| |||||||||||||| |||   | | ||||||||||| ||||||||||| ||||||||    
T  15615920 agagtgtgtttggatgaggtaattgataaa-ttttaaagaatttaaaatattaggcaattcaaatgaatcaattaaattactttcatt 15616006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 446
Target Start/End: Original strand, 15954 - 16052
Alignment:
Q  342 agtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtattattgtttggatgga 441  Q
    ||||||||||||| |||| ||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||     ||||||||||||||| ||    
T  15954 agtatttgagaaa-ttttgaagaatttagaattctaggtaatttaaatgattcaattaaattgctttcattcttaaa-----tattattgtttggattga 16047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 327 - 442
Target Start/End: Original strand, 49838 - 49947
Alignment:
Q  327 agtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcattcttaaatacagtat 426  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||||| || |||| ||||||||||||||||||||  |||||||| ||||     |||    
T  49838 agtgtgtttggatggagtaattgagaaa-ttttgaagaatttagaatttaaggtaactcaaatgattcaattaaattaatttcattcctaaa-----tat 49931  T
Q  427 tattgtttggatggag 442  Q
    ||||||||||||||||    
T  49932 tattgtttggatggag 49947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 11499 - 11582
Alignment:
Q  328 gtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||    
T  11499 gtgtgtttggatgaggtatttg-gaaaattttaaagaatttagaattctaagtaatttaaatgatttaattaaattactttcatt 11582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 3407 - 3320
Alignment:
Q  324 aagagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||| ||||||||  ||| |||||||| |||||||||||||||||||  |  ||||| |||||||||||||||||| ||||||||    
T  3407 aagagtgtctttggatgaggtaattgagaaa-ttttaaagaatttagaattttagttaatttaaatgattcaattaaattactttcatt 3320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 7674 - 7615
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||    
T  7674 aaattttaaagaatttagaattctaggcaatttaaatgattcaattaaattactttcatt 7615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 4568 - 4482
Alignment:
Q  325 agagtgtgtttggatggagtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||| | | |||| |||||||||| ||||| ||||||||||    
T  4568 agagtgtgtttggatgaactaattgggaaa-ttttaaagaatttagaattctaggcaatttaaatgattcatttaaaatgctttcatt 4482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 404
Target Start/End: Original strand, 2996 - 3057
Alignment:
Q  342 agtatttgagaaaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattg 404  Q
    ||||||||||||| |||| ||||||||||||||| | |||||| |||||||||||||||||||    
T  2996 agtatttgagaaa-ttttgaagaatttagaattctaggtaatttaaatgattcaattaaattg 3057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 19334 - 19393
Alignment:
Q  353 aaattttaaagaatttagaattcaaagtaattcaaatgattcaattaaattgctttcatt 412  Q
    ||||||||||||||||||||||  | | |||| |||||||||||||||||| ||||||||    
T  19334 aaattttaaagaatttagaattttaggcaatttaaatgattcaattaaattactttcatt 19393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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