View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_high_8 (Length: 420)
Name: NF3539_high_8
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Complemental strand, 3766712 - 3766297
Alignment:
| Q |
5 |
cacttttatgttagacagttgttcaataagatcctgaatttcgctctcgagtagatcgcaactcctgatcgactgtttttgtgtaaaatccgattgagtt |
104 |
Q |
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| T |
3766712 |
cacttttatgttagacagttgttcaataagctcctgaatttcgctctcgagtagatcgcaactcctgatcgactgtttttgtgtaaaatccgattgagtt |
3766613 |
T |
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| Q |
105 |
gtaactctcgattggttttctttttctagtcaagtgagcaattttaaagaatctattaaacaaccatatttttgttacgaagtatttctcactgtccatt |
204 |
Q |
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| T |
3766612 |
gtaactctcgattggttttctttttccagtcaagtgagcaattttaaataatctattgaacaaccatatttttgttacgaagtatttctcactgcccatt |
3766513 |
T |
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| Q |
205 |
taatcaatatctaacttttcacattttcctttttgtatgttttcatataggctggaccagcaggaatcttttcacacaaagaggtcttcacctctataca |
304 |
Q |
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| T |
3766512 |
taatcaatatttaacttttcacattttcctttttgtatgttttcatataggctggaccagcaggaatcttttcacacaaagaggtcttcacctctataca |
3766413 |
T |
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| Q |
305 |
caacaccataaaacaggtcttcaaatgtaagaatagatctacctcaaatcttttactagtacgtgtttgttagaaccggatcgaaccgggttgaatttgt |
404 |
Q |
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| T |
3766412 |
caacaccataaaacaggtcttcaaatgtaagaatagatctacctcaaatcttttactagtacgtgtttgttagaaccggatcgaaccgggttgaatttgt |
3766313 |
T |
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| Q |
405 |
tatttggttctctgct |
420 |
Q |
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| T |
3766312 |
tatttggttcactgct |
3766297 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 339
Target Start/End: Complemental strand, 48388707 - 48388621
Alignment:
| Q |
253 |
aggctggaccagcaggaatcttttcacacaaagaggtcttcacctctatacacaacaccataaaacaggtcttcaaatgtaagaata |
339 |
Q |
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| T |
48388707 |
aggctggaccggcaggtatcttgacacacagggaagtcttcacttctatatacaacacaatcaaacaagtctttaaatgtaagaata |
48388621 |
T |
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