View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_1 (Length: 826)
Name: NF3539_low_1
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 739; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 1 - 809
Target Start/End: Complemental strand, 51403594 - 51402776
Alignment:
| Q |
1 |
acccaaagtgaaatcaggggcgacgtgtcatcgccagataatgatatggctagagcgagaagtacccaggctgcaacatcattaacagcagctgctgaca |
100 |
Q |
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| T |
51403594 |
acccaaagtgaaatcaggggcgacgtgtcatcgccagataatgatatggctagagcaagaagtacccaggctgcaacatcattaacagcagctgctgaca |
51403495 |
T |
|
| Q |
101 |
ttgctatacgaccaacatccgtggttagcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51403494 |
ttgctatacgaccaacatccgtggttagcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagac |
51403395 |
T |
|
| Q |
201 |
aaggaaagggacaggttgtgcacctttggagattgtggctctaagaacaatggatgttcctatgccaagaacaaatgggaatgtgattccacagagggca |
300 |
Q |
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| T |
51403394 |
aaggaaagggacaggttgtgcacctttggagattgtggctctaagaacaacggatgttcctatgccaagaacaaatgggaatgtgattccacaaagggca |
51403295 |
T |
|
| Q |
301 |
attgctaaggcttttttacctgttctacggattgaacgcatgtcgagttcaagacctactaggaataagaagaacaaaagaccaatgttggctagtgtgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51403294 |
attgctaaggcttttttacctgttctacggattgaacgcatgtcgagttcaagacctactaggaataagaagaacaaaagaccaatgttggctagtgtgt |
51403195 |
T |
|
| Q |
401 |
ctaggactgttaagcttctctttgggaaaactgtgtgtaggaatttctcacttcgacctattgctgatggtccaagcagtattcctccctgcgttgaaca |
500 |
Q |
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| T |
51403194 |
ctaggactgttaagcttctctttgggaaaactgtgtgtaggaatttctcgcttcgacctattgctgatggtccaagcagtattcctccctgcattgaaca |
51403095 |
T |
|
| Q |
501 |
ttttcacataagaaacttacaaaagtgacagcaacattcaataggcaacatacaaaagttttacttgcaacagaagaaattaagttt---------cact |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
51403094 |
ttttcacataagaaacttacaaaagtgacagcaacattcaataggcaacatacaaaagttttacttgctacagaagaaattaagtttcaatgattccact |
51402995 |
T |
|
| Q |
592 |
tatatcttaatataaaacaaaattctaaacattttaattttatattgaccaccttaatataatgaccaaagtcgcaagaccagcgtagatgcacgactat |
691 |
Q |
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| T |
51402994 |
tatatcttaatataaaacaaaattctaaacattttaattttatattgaccaccttaatataatgaccaacgttgcaagaccagcgtagatgcacgactat |
51402895 |
T |
|
| Q |
692 |
tccactaattcacaaaacaaacaaatttctttttgatgtataagctagtcggaaactaatccctc-gaaatctattcagaaggcaaaattctctttattt |
790 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51402894 |
tccactaattcacaaaacaaacaaatttctatttgatgtgtaagctagtcggaaactaatccctcagaaatctattcagaaggcaaaattctctttattt |
51402795 |
T |
|
| Q |
791 |
gaaatcaaaggatggtgtg |
809 |
Q |
| |
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||||||||||||||||||| |
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| T |
51402794 |
gaaatcaaaggatggtgtg |
51402776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 52 - 428
Target Start/End: Original strand, 29983284 - 29983660
Alignment:
| Q |
52 |
agagcgagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatccgtggttagcagtttgagctcagctaggattc |
151 |
Q |
| |
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||||| ||||||| ||| || || || ||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||| ||||||||||||| |
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| T |
29983284 |
agagcaagaagtatccaagcagcgacgtcattgacagcagcagctgacattgccatccgaccaacatcggttgtgaggagtttgagttcagctaggattc |
29983383 |
T |
|
| Q |
152 |
gagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaaggaaagggacaggttgtgcacctttggagattgtggctctaagaacaat |
251 |
Q |
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|||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||||| | || | ||| ||||| |||||||| | |||||||| |
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| T |
29983384 |
gagcaaggacaggaaaggctgtgatcgagagagcaacgcccatgaaaacaaggaaggaagttggattagcatctttgtttattgtggcacgaagaacaag |
29983483 |
T |
|
| Q |
252 |
ggatgttcctatgccaagaacaaatgggaatgtgattccacagagggcaattgctaaggcttttttacctgttctacggattgaacgcatgtcgagttca |
351 |
Q |
| |
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|| || || |||||||| |||||||||| |||||||||| ||||| || |||||||||| ||||||| | || || |||||||||||||||||| |
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| T |
29983484 |
tgaggtgccaatgccaagtacaaatgggactgtgattccagcaagggctatgcataaggcttttgaacctgttttgcgtatcgaacgcatgtcgagttca |
29983583 |
T |
|
| Q |
352 |
agacctactaggaataagaagaacaaaagaccaatgttggctagtgtgtctaggactgttaagcttctctttgggaa |
428 |
Q |
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||||||||||| ||||||||||| | || ||||||||||||||||| || || |||||||||||||| || ||||| |
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| T |
29983584 |
agacctactagaaataagaagaatagcaggccaatgttggctagtgtatcaagaactgttaagcttcttttagggaa |
29983660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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