View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_10 (Length: 425)
Name: NF3539_low_10
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 44265582 - 44265974
Alignment:
| Q |
16 |
aagaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaac |
115 |
Q |
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| T |
44265582 |
aagaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaac |
44265681 |
T |
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| Q |
116 |
cttttcttcatccatgatgttgttgcactttcaggtgaattcgcatttgcatttgaatttgaatttgaagattcaaggtcagggagccatttggaagcat |
215 |
Q |
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| T |
44265682 |
cttttcttcatccatgatgttgttacactttcaggtgaatttgcatttgcatttgaatttgaatttgaagattcaaggtcagggagccatttggaagcat |
44265781 |
T |
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| Q |
216 |
agtgagtgatgatggaaccgattaaatcggaacgaacacctttttgtttgatgtttgaaagggtcttaatgaagcaatccatgtcaaggatgcatgcatc |
315 |
Q |
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| T |
44265782 |
agtgagtgatgatggaaccgattaaatcggaacgaacacctttttgtttgatgtttgaaagggtcttaatgaagcaatccatgtcaaggatgcatgcatc |
44265881 |
T |
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| Q |
316 |
ttcgaaccagcaacaatattccaaagttacttgttggtttggacttgtttctggttctgtgaaacattgtttcttcattttagtgagtatagt |
408 |
Q |
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| T |
44265882 |
ttcgaaccagcaacaatattccaaagttacttgttggtttggacttgtttctggttctgtgaaacattgtttcttcattttagtgagtatagt |
44265974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 2835355 - 2835248
Alignment:
| Q |
46 |
aaggaggaagttgcatggaatggaatctttgtctggtggaagaacactgactaaggtttcaacaaagaaccttttcttcatccatgatgttgttgcactt |
145 |
Q |
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|||||| ||||| |||||||| |||||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
2835355 |
aaggagaaagttacatggaattgaatctttctctggtggtagaacattaactaaggtttctacaaagaaccttttcttcatccatgatgttgttacactc |
2835256 |
T |
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| Q |
146 |
tcaggtga |
153 |
Q |
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|| ||||| |
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| T |
2835255 |
tctggtga |
2835248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 2835214 - 2835167
Alignment:
| Q |
193 |
gtcagggagccatttggaagcatagtgagtgatgatggaaccgattaa |
240 |
Q |
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| T |
2835214 |
gtcagggagccatttggaggcatagtgtgtgattatggaaccgattaa |
2835167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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