View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_18 (Length: 341)
Name: NF3539_low_18
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 71 - 327
Target Start/End: Original strand, 1187932 - 1188188
Alignment:
| Q |
71 |
gctccttcagagacaaactcaactactccatcaccaccaaaggataatggagctgttggtgtttccaatggtgttagtcttttgattggttctttctttg |
170 |
Q |
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| T |
1187932 |
gctccttcagagacaaactcaactactccatcaccaccaaaggataatggagctgttggtgtttccaatggtgttagtcttttgattggttctttctttg |
1188031 |
T |
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| Q |
171 |
tttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcaccataatttatgtactattggtttgttgaatttgcttgaatt |
270 |
Q |
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| T |
1188032 |
tttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcaccataatttatgtactattggtttgttgaatttgcttgaatt |
1188131 |
T |
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| Q |
271 |
tcatttcatcttgatgtgtatgagcctttaattaaaaaagaaaacatatcttctttt |
327 |
Q |
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| T |
1188132 |
tcatttcatcttgatgtgtatgagcctttaattaaaaaagaaaacatttcttctttt |
1188188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 1180758 - 1180963
Alignment:
| Q |
71 |
gctccttcagagacaaactcaactactccatcaccaccaaaggataatggagctgttggtgtttccaatggtgttagtcttttgattggttctttctttg |
170 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1180758 |
gctccttcagagacaaattcaactactccatcaccaccaaaggataatggagcttttagtgtttccaatggtgttagtcttttgatgggttctttctttg |
1180857 |
T |
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| Q |
171 |
tttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcaccataatttatgtactattggtttgttgaatttgcttgaatt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
1180858 |
tttcagcaatgattttgggtttgatgggctagggaagagacagtgctattgttaatcatcttaatttatgtactattggtttgttgaatttgcttaaatt |
1180957 |
T |
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| Q |
271 |
tcattt |
276 |
Q |
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| T |
1180958 |
ttattt |
1180963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 1180989 - 1181025
Alignment:
| Q |
275 |
ttcatcttgatgtgtatgagcctttaattaaaaaaga |
311 |
Q |
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| T |
1180989 |
ttcatcttgatgtgtatgagcttttaattaaaaaaga |
1181025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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