View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3539_low_21 (Length: 325)
Name: NF3539_low_21
Description: NF3539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3539_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 39491260 - 39491554
Alignment:
| Q |
15 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
114 |
Q |
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| T |
39491260 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
39491359 |
T |
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| Q |
115 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgac |
214 |
Q |
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| T |
39491360 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgac |
39491459 |
T |
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| Q |
215 |
caaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattga |
309 |
Q |
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| T |
39491460 |
caaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattga |
39491554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 39287775 - 39287481
Alignment:
| Q |
15 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39287775 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
39287676 |
T |
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| Q |
115 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgac |
214 |
Q |
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| T |
39287675 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttatttgctggccttcttggcttgat |
39287576 |
T |
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| Q |
215 |
caaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattga |
309 |
Q |
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| T |
39287575 |
caaccaacaaatgcaatgcttattgagaatgtgtttaggaatggggtgaaagtgaattatggggaagatggggttgcaagtgtaaaagagattga |
39287481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 5906115 - 5905995
Alignment:
| Q |
32 |
gaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcaccctgctgttgcttgtt |
131 |
Q |
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||||| ||||||| ||||||| |||| || |||| |||||||||||||| | ||||||| || |||||||| |||| |||||||| || ||||||| |
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| T |
5906115 |
gaatttccaaaagggtttttggaagaaacaaaaggaagaggtttggttgtaacatggtgtaatcaagagaaggttttaagccaccctgcagtggcttgtt |
5906016 |
T |
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| Q |
132 |
ttctaagtcattgtggttgga |
152 |
Q |
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|| | |||||||||||||| |
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| T |
5906015 |
ttttgtctcattgtggttgga |
5905995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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